PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G30510.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 159aa MW: 17091.5 Da PI: 12.1597

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G30510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.3	5.1e-11	45	89	3	47
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 + +r rrk++NRe+ArrsR+RK+ ++eL+ +++ L N++L+ ONIVA03G30510.1 45 DERRLRRKISNRESARRSRARKQRHLDELRARAERLRRCNRELAA 89 66899***********************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.3E-8	37	90	No hit	No description
SMART	SM00338	1.3E-7	43	107	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.208	45	90	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.33E-8	47	91	No hit	No description
Pfam	PF00170	1.6E-7	47	88	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	50	65	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MPLMHLLAPP AQAFVVAPAF DGAAAPPRED DPAADQPPER EADADERRLR RKISNRESAR 60 RSRARKQRHL DELRARAERL RRCNRELAAR GHAARGRAGL VRLANARLRA EAAALTRRLA 120 AARRAIALGQ LYRAAAAAAA AAAGGGVGTF EQTIASLIA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	66	RRSRARKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079830	0.0	AC079830.9 Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152293.1	6e-25	ocs element-binding factor 1-like
TrEMBL	A0A0E0GRQ5	1e-100	A0A0E0GRQ5_ORYNI; Uncharacterized protein
STRING	ONIVA03G30510.1	1e-100	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27211	4	5