PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G30930.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 1033aa    MW: 112486 Da    PI: 6.5565
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G30930.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-084014381954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  ONIVA03G30930.2 401 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 438
                      664559******************************88 PP
2Homeobox23.21.2e-0797110032254
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox   22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54  
                       ++yp+ +e+  LA  +gL+ +q+++WF N R +
  ONIVA03G30930.2  971 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 1003
                       89*****************************88 PP
3BELL119.31.7e-38264335172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+qelq+k akL+ +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iS+hFrcLkdai +qi
  ONIVA03G30930.2 264 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISKHFRCLKDAINDQI 335
                      689*******************************************************************98 PP
4BELL58.61.5e-198298911072
             BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      akLlsll e++ r+++y  +l+ v +sFe + g g+ + Yt+l  +a+SrhF +L+ ai  ++
  ONIVA03G30930.2 829 AKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTALMAQAMSRHFGSLRRAILRKL 891
                      8**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-56188333IPR006563POX domain
PfamPF075264.8E-51194331IPR006563POX domain
PROSITE profilePS5007112.357379442IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.3E-28381451IPR009057Homeodomain-like
SMARTSM003891.6E-9382446IPR001356Homeobox domain
CDDcd000861.65E-12382443No hitNo description
SuperFamilySSF466895.56E-17383448IPR009057Homeodomain-like
PfamPF059201.8E-17399438IPR008422Homeobox KN domain
SMARTSM005743.1E-17769889IPR006563POX domain
PfamPF075261.9E-20775887IPR006563POX domain
PROSITE profilePS5007111.1759441007IPR001356Homeobox domain
SMARTSM003895.4E-99471011IPR001356Homeobox domain
CDDcd000863.30E-109471008No hitNo description
Gene3DG3DSA:1.10.10.604.8E-259521013IPR009057Homeodomain-like
SuperFamilySSF466892.99E-169531015IPR009057Homeodomain-like
PfamPF059202.0E-169641003IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MATYYSSPGN ERDSQAMYPA DSGNSSYPVP SAIGNMLYPG NGSSGPYTEF SGIIQHQQNF  60
MELPGHPTAI SQDSSSREPN MVASYTDQRS FGPAKDMRNE MLMHLMDGAH NAGADLIHND  120
THSSAQIEFG LLNNHNSMSV APAPGQGLSL SLNTHILAPS YPYWSAKTEL LTPHSYHGDD  180
NRMKNMQSEA SQAIRNSKYL KAAQELLDEV VSVWKSIKQK AQKDQAEAGK SDNKEAEGGS  240
KGEGVSSNPQ ESTANAAPEI SAAEKQELQN KMAKLMAMLD EVDRKYKHYY HQMQIVVSSF  300
DMVAGSGAAK PYTAVALQTI SKHFRCLKDA INDQINVIRK KLGEEESSSG KEGKLTRLRY  360
IDQQLRQQRA FQQYGLLQQN AWRPQRGLPE NSVSILRAWL FEHFLHPYPK DSEKLMLARQ  420
TGLTRSQISN WFINARVRLW KPMIEDMYKE EIGEADLDSN SSSDNVPRSK DKIATSEDKE  480
DLKSSMSQTY QPSQLGESKA NIGMMSLGGA PAGFHNEGNQ DDSFMNLMLK DQRPGEAEGS  540
LLHDAVAHHS DENARFMAYH LSGLGRYGNG NVSLTLGLQH PDNRLSVQNT HQPGFAGAGE  600
EIYNSTASLG VAAASSSDYE STNQIDQRQR PCRCRSSCRI EAAVWLPQAQ GLGSCIFFVR  660
VNAPCCCHVG PGTMASLWLS EDCKVRLTMV ASKQLHSQRC GGHYCQLHHH RPEEIAGAGA  720
ERHQRDGSSG CGGAGPMVVL TLGSGAAAAE DNGGGRSRCC CGAGGAAPAT MVSALRGSRY  780
LLPAQELLRE AVSAAAASAR GGDDDDEAVA SFPHDGKSTG IGGGGGVQAK LLSLLSELES  840
RHEHYFGELR RVSASFEPAL GAGATAGYTA LMAQAMSRHF GSLRRAILRK LRLHAAAAAR  900
TRSALLRLAR DAMEEDDEGD GEEEEEVVNR VVRRTKQAAA ARAEQAWRPL RGLPEDAVGV  960
LRAWLFDHFL HPYPNDNEKL MLAVATGLSR TQISNWFINA RVRLWKPMVE EMYNDEFDDD  1020
DAGSGGGGAS SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-173881010158Homeobox protein Meis1
4xrs_B4e-173881010158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679390.0AK067939.1 Oryza sativa Japonica Group cDNA clone:J013124I05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631000.10.0BEL1-like homeodomain protein 7
RefseqXP_025879417.10.0BEL1-like homeodomain protein 7
TrEMBLA0A0E0GRV40.0A0A0E0GRV4_ORYNI; Uncharacterized protein
STRINGONIVA03G30930.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-106BEL1-like homeodomain 6