PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G30930.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 747aa    MW: 80007.7 Da    PI: 6.2632
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G30930.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78e-086857172254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ +e+  LA  +gL+ +q+++WF N R +
  ONIVA03G30930.3 685 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 717
                      89*****************************88 PP
2BELL59.21e-195436051072
             BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      akLlsll e++ r+++y  +l+ v +sFe + g g+ + Yt+l  +a+SrhF +L+ ai  ++
  ONIVA03G30930.3 543 AKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTALMAQAMSRHFGSLRRAILRKL 605
                      8**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-17483603IPR006563POX domain
PfamPF075261.2E-20489601IPR006563POX domain
PROSITE profilePS5007111.175658721IPR001356Homeobox domain
CDDcd000861.50E-10661722No hitNo description
SMARTSM003895.4E-9661725IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-25666727IPR009057Homeodomain-like
SuperFamilySSF466891.97E-16667729IPR009057Homeodomain-like
PfamPF059201.3E-16678717IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MATYYSSPGN ERDSQAMYPA DSGNSSYPVP SAIGNMLYPG NGSSGPYTEF SGIIQHQQNF  60
MELPGHPTAI SQDSSSREPN MVASYTDQRS FGPAKDMRNE MLMHLMDGAH NAGADLIHND  120
THSSAQIEFG LLNNHNSMSV APAPGQGLSL SLNTHILAPS YPYWSAKTEL LTPHSYHGDD  180
NRMKNMQSEA SQAIRNSNSM SQTYQPSQLG ESKANIGMMS LGGAPAGFHN EGNQDDSFMN  240
LMLKDQRPGE AEGSLLHDAV AHHSDENARF MAYHLSGLGR YGNGNVSLTL GLQHPDNRLS  300
VQNTHQPGFA GAGEEIYNST ASLGVAAASS SDYESTNQID QRQRPCRCRS SCRIEAAVWL  360
PQAQGLGSCI FFVRVNAPCC CHVGPGTMAS LWLSEDCKVR LTMVASKQLH SQRCGGHYCQ  420
LHHHRPEEIA GAGAERHQRD GSSGCGGAGP MVVLTLGSGA AAAEDNGGGR SRCCCGAGGA  480
APATMVSALR GSRYLLPAQE LLREAVSAAA ASARGGDDDD EAVASFPHDG KSTGIGGGGG  540
VQAKLLSLLS ELESRHEHYF GELRRVSASF EPALGAGATA GYTALMAQAM SRHFGSLRRA  600
ILRKLRLHAA AAARTRSALL RLARDAMEED DEGDGEEEEE VVNRVVRRTK QAAAARAEQA  660
WRPLRGLPED AVGVLRAWLF DHFLHPYPND NEKLMLAVAT GLSRTQISNW FINARVRLWK  720
PMVEEMYNDE FDDDDAGSGG GGASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-16667725563Homeobox protein Meis2
4xrm_B4e-16667725563Homeobox protein Meis2
5bng_A3e-16667725159Homeobox protein Meis2
5bng_B3e-16667725159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0607460.0AK060746.1 Oryza sativa Japonica Group cDNA clone:001-032-E12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0GRV50.0A0A0E0GRV5_ORYNI; Uncharacterized protein
STRINGONIVA03G30930.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.16e-34BEL1-like homeodomain 11