PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G32670.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 620aa    MW: 65096 Da    PI: 4.9556
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G32670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.52e-1402366161374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPil 91 
                      lv++Ll+cAeav+++++++a+al++++ +la+++g +m+++aayf eALa+r++r        ++p +++     ++++a+ l   f+e +P+l
  ONIVA03G32670.1 236 LVHALLACAEAVQQENFAAAEALVKQIPTLAASQGGAMRKVAAYFGEALARRVYR--------FRPADST---LLDAAFADLLhahFYESCPYL 318
                      689****************************************************........5565555...3333333333334******** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      kf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +
  ONIVA03G32670.1 319 KFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAAT 412
                      ********************************************************************************************** PP

             GRAS 186 ledleleeL......rvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                      l+dle+ +L      +       E++aVn+v++lhrll+++++le+    vL +v  ++P++v+vveqea+hns+sFl+rf+e+l+yys++fds
  ONIVA03G32670.1 413 LADLEPFMLqpegeaD--AneePEVIAVNSVFELHRLLAQPGALEK----VLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDS 500
                      *********6555442..15579***********************....******************************************** PP

             GRAS 271 leak...........lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                      le +           ++    +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl++aGF+pv+l+++a+kqa++ll+ ++ +dgyrve
  ONIVA03G32670.1 501 LEGGssgqaelsppaAGGGGGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAgGDGYRVE 594
                      *88878888875554444449************************************************************************* PP

             GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                      e++g+l+lgW++rpL+++SaWr
  ONIVA03G32670.1 595 EKEGCLTLGWHTRPLIATSAWR 616
                      *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.7E-3134115No hitNo description
PfamPF120415.1E-3534108IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.691210595IPR005202Transcription factor GRAS
PfamPF035146.9E-138236616IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MKREYQEAGG SSADMGSCKD KVMAGAAGEE EDVDELLAAL GYKVRSSDMA DVAQKLEQLE  60
MAMGMGGVSA PGAADDGFVS HLATDTVHYN PSDLSSWVES MLSELNAPLP PIPPAPLAAR  120
HASTSSTVTG GGGSGFFELP AAADSSSSTY ALRPISLPVV ATADPSAADS ARDTKRMRTG  180
GGSTSSSSSS SSSLGGGASR GSVVEAAPPA TQGAAAANAP AVPVVVVDTQ EAGIRLVHAL  240
LACAEAVQQE NFAAAEALVK QIPTLAASQG GAMRKVAAYF GEALARRVYR FRPADSTLLD  300
AAFADLLHAH FYESCPYLKF AHFTANQAIL EAFAGCRRVH VVDFGIKQGM QWPALLQALA  360
LRPGGPPSFR LTGVGPPQPD ETDALQQVGW KLAQFAHTIR VDFQYRGLVA ATLADLEPFM  420
LQPEGEADAN EEPEVIAVNS VFELHRLLAQ PGALEKVLGT VHAVRPRIVT VVEQEANHNS  480
GSFLDRFTES LHYYSTMFDS LEGGSSGQAE LSPPAAGGGG GTDQVMSEVY LGRQICNVVA  540
CEGAERTERH ETLGQWRNRL GRAGFEPVHL GSNAYKQAST LLALFAGGDG YRVEEKEGCL  600
TLGWHTRPLI ATSAWRVAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5924361526378Protein SCARECROW
5b3h_A4e-5924361525377Protein SCARECROW
5b3h_D4e-5924361525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. In contrast, its overexpression prevents the GA signaling pathway and induces a dwarf phenotype. {ECO:0000250|UniProtKB:Q7G7J6}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631543.10.0DELLA protein SLR1
SwissprotQ2TN880.0SLR1_ORYSI; DELLA protein SLR1
TrEMBLA0A0E0GSJ70.0A0A0E0GSJ7_ORYNI; Uncharacterized protein
STRINGONIVA03G32670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein