PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G37060.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 208aa    MW: 22025.2 Da    PI: 10.6419
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G37060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.24.1e-061431861250
                      HHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHH.HHHHHHH CS
         Homeobox  12 leeLeelFeknrypsaeereeLAkkl....gLterq.VkvWFqN 50 
                      +e+Le++++++++p  ++r++L  +l    +++ +q +kvWF  
  ONIVA03G37060.1 143 VEALERVYAECPKPRFSRRQQLLCELsilaNIEPKQkIKVWFPK 186
                      689***********************99999987766*****65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-5143184IPR009057Homeodomain-like
CDDcd000862.80E-4143184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MPPVLPSSTM MASSTLEEAA PARAAAGAPL LLLHPLVVTA AAGGGTPAES ATGSPSLLVL  60
PPLRPAAAVV AGGGQIRRPT PADPPSCPLP SLVAAVARSR LRVCRRCPSL MAASDRPPAQ  120
DCRTSSPVAA LPLRPLLRSF PTVEALERVY AECPKPRFSR RQQLLCELSI LANIEPKQKI  180
KVWFPKQKVS KSMQGYTIKL VCLLCVWL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-135CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0GUA91e-141A0A0E0GUA9_ORYNI; Uncharacterized protein
STRINGONIVA03G37060.11e-142(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2029646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.16e-15HD-ZIP family protein