PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G37180.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 312aa    MW: 34199.6 Da    PI: 8.6303
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G37180.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092242582155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      k +yps+ e+  LA+ +gL+++q+ +WF N+R ++
  ONIVA03G37180.2 224 KWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRH 258
                      669*****************************885 PP
2ELK41.33.2e-14178199122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      +LKhqLlrKY+g+Lg+L+qEFs
  ONIVA03G37180.2 178 RLKHQLLRKYGGSLGDLRQEFS 199
                      6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-1881125IPR005540KNOX1
PfamPF037901.4E-1882121IPR005540KNOX1
SMARTSM012561.3E-18136188IPR005541KNOX2
PfamPF037916.4E-17146183IPR005541KNOX2
SMARTSM011882.2E-7178199IPR005539ELK domain
PfamPF037899.0E-11178199IPR005539ELK domain
PROSITE profilePS5121310.633178198IPR005539ELK domain
PROSITE profilePS5007112.503198261IPR001356Homeobox domain
SMARTSM003891.2E-11200265IPR001356Homeobox domain
SuperFamilySSF466891.84E-18200265IPR009057Homeodomain-like
CDDcd000862.00E-13201261No hitNo description
Gene3DG3DSA:1.10.10.608.2E-27203261IPR009057Homeodomain-like
PfamPF059205.9E-17218257IPR008422Homeobox KN domain
PROSITE patternPS000270236259IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MESFASLAGG GSSSTTARLP ELISPENPDH ISPPPLLYQL LAGPESSARQ HGHDGHHHGG  60
GGGEAAAAAV QGQVSPAGAE AAVKAEIMSH PQYSALLAAY LGCKKVGAPP DLLTKLTAVP  120
AAQQLDEADG HPRRRHEPQR DDDPDQLDQF MDAYCSMLTR YREELERPIQ EAAEFFSRLK  180
HQLLRKYGGS LGDLRQEFSK RTKKGKLPKE ARQKLLHWWE LHYKWPYPSE MEKMTLAQTT  240
GLDQKQINNW FINQRKRHWK PTPVAGTAFP TMEAAGGGFR HSGHGGGLAA AAALPLYMGR  300
PFVVDGMYRL GS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288840.0AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
GenBankAK1072960.0AK107296.1 Oryza sativa Japonica Group cDNA clone:002-126-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879467.10.0homeobox protein knotted-1-like 8 isoform X2
SwissprotQ10ED20.0KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A0E0GUC50.0A0A0E0GUC5_ORYNI; Uncharacterized protein
STRINGONIVA03G37180.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.18e-49KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]