PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G39240.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 216aa    MW: 22667.7 Da    PI: 8.4511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G39240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH216.2e-07144170430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                      +h+ +Er RR++i +++  L++l+P +
  ONIVA03G39240.1 144 SHSLAERARREKISERMKILQDLVPGC 170
                      8************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-8138172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-4138172No hitNo description
PROSITE profilePS508889.502140216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-8143172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-4144170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDPAPTLAAE LWRTPYLGGG GGGGGGGRGL EAAASGVTEQ SNGSRGGGGG GGAGRRRQRE  60
APALEDDSSR IVSTSGGGGG GQDLTDSEAK RFKASKSDNS SLRTEAETDS RNASKSGDQN  120
PPPPEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC NKFGAQVYNT  180
APGLTFDPQT PREYAQGSTP SEWLHMQIGG TYERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001770.0AK100177.1 Oryza sativa Japonica Group cDNA clone:J023029J10, full insert sequence.
GenBankHQ8588470.0HQ858847.1 Oryza sativa Japonica Group isolate UT1610 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629323.11e-110transcription factor BHLH089-like
SwissprotQ84T081e-111BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A0E0GV461e-153A0A0E0GV46_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P2Q61e-153A0A0E0P2Q6_ORYRU; Uncharacterized protein
STRINGORUFI03G39460.11e-154(Oryza rufipogon)
STRINGONIVA03G39240.11e-154(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-32BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]