PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G40100.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 260aa    MW: 27098.8 Da    PI: 6.161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G40100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.3e-056891326
                     HHHHHHHHHHHHHHHHHHHHHHCT CS
              HLH  3 rahnerErrRRdriNsafeeLrel 26
                     r+h e+E+rRR+ri+s +++Lr +
  ONIVA03G40100.1 68 RNHREAEKRRRERIKSHLDRLRAI 91
                     78*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.03E-768113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MFPVEVAAAA AAAGRMQGEA VVPMMLPPFF MDSGIWPAAA GVVDVAASAE EEAAAAAAAQ  60
DRALAASRNH REAEKRRRER IKSHLDRLRA IDKASLLAKA VERVRDLKQR MAGIGEAAPA  120
HLFPTEHDEI VVLASGGGGV GGAGGAAAVF EASVCCDDRS DLLPELIETL RALRLRTLRA  180
EMATLGGRVR NVLVLARDAG GAGEGGDGDD DRAGYSAVSN DGGDFLKEAL RALVERPGAA  240
AGDRPKRRRV VSDMNMQAAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245249KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629146.12e-97transcription factor bHLH106
TrEMBLA0A0E0GVG01e-179A0A0E0GVG0_ORYNI; Uncharacterized protein
STRINGONIVA03G40100.11e-179(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-15bHLH family protein