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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | ONIVA03G41660.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | B3 | ||||||||
| Protein Properties | Length: 846aa MW: 93864.1 Da PI: 9.1345 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 36.8 | 1.2e-11 | 6 | 145 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgy.. 82
+G+ F+P+d++l + yL+ + +++ +++ ++ +d+y++ P +L + + +++ + wy F++ + ++g rk r++ g
ONIVA03G41660.1 6 KGLVFSPSDDQLTDGYLRSYLVRTSlddlpSAATSYFHVADVYSAPPDQLVAglapapgTGDGDGRVWYVFTPVRVLGSRGARKARTVGGGGge 99
6999***************998888667643333459999**********7456776654455778********************87755334 PP
NAM 83 .WkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
W+a g k+v+ +++ g + + + k +k W+m e++l
ONIVA03G41660.1 100 cWHAEGGPKDVKG--SAAGGKLQKFSYKiKTALGAVVKPGWLMVEFSL 145
5**********87..666677777888733344556799*******87 PP
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| 2 | B3 | 61.4 | 1.5e-19 | 400 | 487 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
f+kv+ +k+g +++p kfa+++gg+ s t++le+++g+++ev++ k + vl++GW++F++a +L+ gD++vF ++g+s f +v
ONIVA03G41660.1 400 FIKVM--ITDFKNG-VTIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIYSGNSHF--KV 484
67777..6678887.********9999994..559***************..**********************************9999..66 PP
EEE CS
B3 95 kvf 97
++
ONIVA03G41660.1 485 WIY 487
655 PP
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| 3 | B3 | 41.9 | 1.8e-13 | 597 | 680 | 6 | 93 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
+ + + + g+l ++k++a ++ ++k+e t++l + ++ +W++ l + + y l++GW +F + n+L+egD++vF+ ++++++ v
ONIVA03G41660.1 597 MDKASATDGLLAISKDYAVSYLLDKNE--TIKLCHsGRSMTWDISL--DIDTDDqYALSTGWLDFIRNNHLQEGDICVFEASKNKRG--V 680
5566778899***********888767..56665536678899999..4444434*************************8887666..3 PP
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| 4 | B3 | 41.1 | 3.2e-13 | 757 | 843 | 13 | 100 |
TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-SS CS
B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrks 100
s+ ++++ k+a+++ e+ +++ + ++s++ k ++ + + + l++GW +Fv++n++k gD+++F+l+++ ++ ++v+++rks
ONIVA03G41660.1 757 SRYMCFSAKYAAKYlP--R-EKNKIMSLRLPNKSYKYKAVFKINNKVHKLGGGWGKFVDDNKIKLGDICLFQLMKNkKKLMMMVHIIRKS 843
5667888899999942..2.333566666677888888888999999***************************999*********9985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 8.76E-22 | 4 | 159 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 19.921 | 4 | 159 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.6E-7 | 7 | 145 | IPR003441 | NAC domain |
| SuperFamily | SSF101936 | 1.67E-22 | 394 | 492 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.1E-22 | 396 | 492 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 13.465 | 397 | 490 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.58E-21 | 398 | 488 | No hit | No description |
| SMART | SM01019 | 2.6E-16 | 400 | 490 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.5E-17 | 400 | 486 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 5.4E-17 | 586 | 684 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 8.44E-18 | 586 | 685 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.40E-11 | 591 | 672 | No hit | No description |
| PROSITE profile | PS50863 | 12.379 | 592 | 687 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 5.5E-6 | 593 | 690 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.7E-10 | 598 | 679 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.3E-16 | 736 | 843 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.55E-19 | 737 | 843 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 4.08E-14 | 742 | 824 | No hit | No description |
| SMART | SM01019 | 4.2E-6 | 744 | 843 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 9.841 | 745 | 843 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.0E-11 | 756 | 842 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 846 aa Download sequence Send to blast |
MAEIGKGLVF SPSDDQLTDG YLRSYLVRTS LDDLPSAATS YFHVADVYSA PPDQLVAGLA 60 PAPGTGDGDG RVWYVFTPVR VLGSRGARKA RTVGGGGGEC WHAEGGPKDV KGSAAGGKLQ 120 KFSYKIKTAL GAVVKPGWLM VEFSLPGSDH LALCKVYRSP RTSRYGAPSP PSSAASSPSR 180 AAPPPVSSTS GRKRKAEEES DHPEAPASSA PRRTLPASEQ HVDVDAAAAS EPDQGGYLNT 240 DQLDSVAAFV QEHEAFVQEH EGDEEFYKNL GFDERSDPQC WTNFFLSALE EFGPAPETDA 300 AAVAVAAVEP GPCPDPTPSF TMGYNAPKDI FSFKFYVYIY CRCLDMVALW LASSALLKHG 360 KLALRADRQS GHRMEKSHRV CKNCVANHYW LHMDNHGKSF IKVMITDFKN GVTIPAKFAR 420 NFGGQMSGTV KLETRNGKTY EVQVAKELNN LVLRSGWERF ASAYELEKGD ILVFIYSGNS 480 HFKVWIYDPS ACEKELPCII TEQLPRVQQR SISHNNHTQL KRNAKSAKLY VDSSGHTERV 540 PSSEELDEPV DLANVQKATK SFYSLPRMCN MTSAQKAEVD ALEKRIKPQI PFYITVMDKA 600 SATDGLLAIS KDYAVSYLLD KNETIKLCHS GRSMTWDISL DIDTDDQYAL STGWLDFIRN 660 NHLQEGDICV FEASKNKRGV ALIFHPLKQS HHPKPPGCVP STKFPRHGVS KPNYIVSRFT 720 TLSGQLKIKV EAKVQAIQSE IPIFVAVMRE SFIRGRSRYM CFSAKYAAKY LPREKNKIMS 780 LRLPNKSYKY KAVFKINNKV HKLGGGWGKF VDDNKIKLGD ICLFQLMKNK KKLMMMVHII 840 RKSEFC |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC133339 | 0.0 | AC133339.3 Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence. | |||
| GenBank | AC133778 | 0.0 | AC133778.4 Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence. | |||
| GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
| GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025878051.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080 | ||||
| Swissprot | Q2QMT6 | 0.0 | Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080 | ||||
| TrEMBL | A0A0E0GVZ7 | 0.0 | A0A0E0GVZ7_ORYNI; Uncharacterized protein | ||||
| STRING | ONIVA03G41660.1 | 0.0 | (Oryza nivara) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP562 | 34 | 179 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G33280.1 | 3e-21 | B3 family protein | ||||




