PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G42070.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 187aa    MW: 20346.8 Da    PI: 8.9603
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G42070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.6e-09105149347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       W++eE+ + ++++++ G g+W+ I+ +    Rt+ q+ s+ qky
  ONIVA03G42070.1 105 IWSEEEHRQCLRGIEEIGHGRWTQISIEYVPSRTPIQIASHSQKY 149
                      6*************************98888************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.7151769IPR017877Myb-like domain
SMARTSM00717222176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-42469IPR009057Homeodomain-like
CDDcd001670.001242469No hitNo description
PROSITE profilePS5129410.78598154IPR017930Myb domain
SuperFamilySSF466893.36E-1499155IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-10102152IPR006447Myb domain, plants
SMARTSM007173.8E-5102152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-9104145IPR009057Homeodomain-like
PfamPF002492.6E-7105149IPR001005SANT/Myb domain
CDDcd001674.03E-7106145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGDLVGDGAA PAAAEPAPAA AACRWTRQKD KLLETLVARC AMNRQCVGGW DAIAAAFGDD  60
RTAAQVEQRS SRRRAGGAVK HAAAGPGSDG GGEEGKVVVE KKSGIWSEEE HRQCLRGIEE  120
IGHGRWTQIS IEYVPSRTPI QIASHSQKYF LRMAKPKEDR KRKSIHDTPY HLHLPNAADA  180
HAHQQQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-125CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629677.11e-110transcription factor MYBS1-like
TrEMBLA0A0E0GW501e-134A0A0E0GW50_ORYNI; Uncharacterized protein
STRINGONIVA03G42070.11e-135(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1818388
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-18MYB family protein