PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G42290.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 977aa MW: 107811 Da PI: 4.8206

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G42290.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.5e-08	733	774	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W++ E ++++++ +q+G++ ++ I + ++ ++++q++ ++ ONIVA03G42290.2 733 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 774 569*****************.*****.******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.79E-10	724	780	IPR009057	Homeodomain-like
Pfam	PF15963	5.3E-25	726	798	No hit	No description
SMART	SM00717	7.5E-9	732	780	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-5	733	775	IPR009057	Homeodomain-like
CDD	cd00167	1.42E-6	735	775	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MLDPVPVQEE AYEAGYGEVA SRAGEGRGSS SGHIAMIDDE ADFGNITDAT EGQAAAKFRP 60 KARAKPRKTS LPSRSLAPHP TVESTDENVE TLNKDSTSHE QSVDKKAASL GCHGNEADGN 120 ACASGGILDT PSEDVVTVSL GLVNNPDVAL DSSTVFASVH KVSQNEENND DLSHVATHKE 180 SMVVSDTQAP PTCCSAKTID DLADFEGLCD DTHVEEERVA KFQPKFRVKT SKATSKSQRT 240 NQKAGVSTVD VVSQNKEDGK DQAGCNDKQL HSPTGHQESV QISYSQAHLG THNSTIDDVA 300 NSDSIMEEPA QEEMAAKFQP RLRPKAGGAS PGVAETIDAA CVATPEFGVS SADVVSQDTE 360 EDSHREGLSD GSCQKYIDEE AITTSGTGPP QDLDATVDLD SHAEMVNPHP DGSPLIIGEP 420 SAETTVKFQP YVRRKKGKGK SVSFVPPNVS HAHTPTDTNS ETSNSSHFCK DIATGESLSN 480 LPQQASEKIC ISGEHHPDDQ ECNDPENQYH EGEPYDHVIE QEPERDVRET GTPMILRNRG 540 KLQKDGIPEH TADDIMDEDF GEPPSDEQDN DSGDEYTARG KQKGRRKSRE KNINKEPSRG 600 TKRTSGDSTI EESQKQKLQK NKSKTSSRGQ KKTSKDSSVE QPEKKLTHRI RRKRMEEVKT 660 LLETPDHEID RMKLSGKEIP SGPSSSNHST SQFGDMDDEY NEQDNWDNDR TENHVVENTT 720 KLNYHSYMNR QTRAKWSKSE TDKFYEGLQQ FGSDFAMIQH LFPDKSRNQV RQKFKAEEKK 780 HPMQVHDAIM HRSREVIKKL NIEDVQPDIN NTHEQEGTSN EEDPGNKNIP GGLINEEEEN 840 GLDWSDKELD MHRSEVEEKE HVSTNDDDDD DLGDAKMEVV QCEDKVRGGG ARDDIVRLST 900 GRPSQSHHSL DPLALLSMAA SRLLPHTVSG LQLKVRCLFQ GSSAIEHAIK KVQMSILILE 960 HCYQNMNSTY LLLVPYL

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MLDPVPVQEE AYEAGYGEVA SRAGEGRGSS SGHIAMIDDE ADFGNITDAT EGQAAAKFRP  60
KARAKPRKTS LPSRSLAPHP TVESTDENVE TLNKDSTSHE QSVDKKAASL GCHGNEADGN  120
ACASGGILDT PSEDVVTVSL GLVNNPDVAL DSSTVFASVH KVSQNEENND DLSHVATHKE  180
SMVVSDTQAP PTCCSAKTID DLADFEGLCD DTHVEEERVA KFQPKFRVKT SKATSKSQRT  240
NQKAGVSTVD VVSQNKEDGK DQAGCNDKQL HSPTGHQESV QISYSQAHLG THNSTIDDVA  300
NSDSIMEEPA QEEMAAKFQP RLRPKAGGAS PGVAETIDAA CVATPEFGVS SADVVSQDTE  360
EDSHREGLSD GSCQKYIDEE AITTSGTGPP QDLDATVDLD SHAEMVNPHP DGSPLIIGEP  420
SAETTVKFQP YVRRKKGKGK SVSFVPPNVS HAHTPTDTNS ETSNSSHFCK DIATGESLSN  480
LPQQASEKIC ISGEHHPDDQ ECNDPENQYH EGEPYDHVIE QEPERDVRET GTPMILRNRG  540
KLQKDGIPEH TADDIMDEDF GEPPSDEQDN DSGDEYTARG KQKGRRKSRE KNINKEPSRG  600
TKRTSGDSTI EESQKQKLQK NKSKTSSRGQ KKTSKDSSVE QPEKKLTHRI RRKRMEEVKT  660
LLETPDHEID RMKLSGKEIP SGPSSSNHST SQFGDMDDEY NEQDNWDNDR TENHVVENTT  720
KLNYHSYMNR QTRAKWSKSE TDKFYEGLQQ FGSDFAMIQH LFPDKSRNQV RQKFKAEEKK  780
HPMQVHDAIM HRSREVIKKL NIEDVQPDIN NTHEQEGTSN EEDPGNKNIP GGLINEEEEN  840
GLDWSDKELD MHRSEVEEKE HVSTNDDDDD DLGDAKMEVV QCEDKVRGGG ARDDIVRLST  900
GRPSQSHHSL DPLALLSMAA SRLLPHTVSG LQLKVRCLFQ GSSAIEHAIK KVQMSILILE  960
HCYQNMNSTY LLLVPYL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633004.1	0.0	uncharacterized protein LOC9267825
TrEMBL	A0A0E0GW78	0.0	A0A0E0GW78_ORYNI; Uncharacterized protein
STRING	ONIVA03G42290.3	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-30	MYB_related family protein