PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G42290.3

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 996aa MW: 110031 Da PI: 4.8905

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G42290.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.5e-08	752	793	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W++ E ++++++ +q+G++ ++ I + ++ ++++q++ ++ ONIVA03G42290.3 752 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 793 569*****************.*****.******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.93E-10	743	799	IPR009057	Homeodomain-like
Pfam	PF15963	5.4E-25	745	817	No hit	No description
SMART	SM00717	7.5E-9	751	799	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-5	752	794	IPR009057	Homeodomain-like
CDD	cd00167	1.45E-6	754	794	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MLDPVPVQEE AYEAGYGEVA SRAGEGRGSS SGHIAMIDDE ADFGNITDAT EGQAAAKFRP 60 KARAKPRKTS LPSRSLAPHP TVESTDENVE TLNKDSTSHE QSVDKKAASL GCHGNEADGN 120 ACASGGILDT PSEDVVTVSL GLVNNPDVAL DSSTVFASVH KVSQNEENND DLSHVATHKE 180 SMVVSDTQAP PTCCSAKTID DLADFEGLCD DTHVEEERVA KFQPKFRVKT SKATSKSQRT 240 NQKAGVSTVD VVSQNKEDGK DQAGCNDKQL HSPTGHQESV QISYSQAHLG THNSTIDDVA 300 NSDSIMEEPA QEEMAAKFQP RLRPKAGGAS PGVAETIDAA CVATPEFGVS SADVVSQDTE 360 EDSHREGLSD GSCQKYIDEE AITTSGTGPP QDLDATVDLD SHAEMVNPHP DGSPLIIGEP 420 SAETTVKFQP YVRRKKGKGK SVSFVPPNVS HAHTPTDTNS ETSNSSHFCK DIATGESLSN 480 LPQQASEKIC ISGEHHPDDQ ECNDPENQYH EGEPYDHVIE QEPERDVRET GTPMILRNRG 540 KLQKDGIPEH TADDIMDEDF GEPPSDEQDN DSGDEYTARG KQKGRRKSRE KNINKEPSRG 600 TKRTSGDSTI EESQKQKLQK NKSKTSSRGQ KKTSKDSSVE QPEKKLTHRI RRKRMEEVKT 660 LLETPDHEID RMKLSVTHLR LLQEAKERIK ASFVGKEIPS GPSSSNHSTS QFGDMDDEYN 720 EQDNWDNDRT ENHVVENTTK LNYHSYMNRQ TRAKWSKSET DKFYEGLQQF GSDFAMIQHL 780 FPDKSRNQVR QKFKAEEKKH PMQVHDAIMH RSREVIKKLN IEDVQPDINN THEQEGTSNE 840 EDPGNKNIPG GLINEEEENG LDWSDKELDM HRSEVEEKEH VSTNDDDDDD LGDAKMEVVQ 900 CEDKVRGGGA RDDIVRLSTG RPSQSHHSLD PLALLSMAAS RLLPHTVSGL QLKVRCLFQG 960 SSAIEHAIKK VQMSILILEH CYQNMNSTYL LLVPYL

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MLDPVPVQEE AYEAGYGEVA SRAGEGRGSS SGHIAMIDDE ADFGNITDAT EGQAAAKFRP  60
KARAKPRKTS LPSRSLAPHP TVESTDENVE TLNKDSTSHE QSVDKKAASL GCHGNEADGN  120
ACASGGILDT PSEDVVTVSL GLVNNPDVAL DSSTVFASVH KVSQNEENND DLSHVATHKE  180
SMVVSDTQAP PTCCSAKTID DLADFEGLCD DTHVEEERVA KFQPKFRVKT SKATSKSQRT  240
NQKAGVSTVD VVSQNKEDGK DQAGCNDKQL HSPTGHQESV QISYSQAHLG THNSTIDDVA  300
NSDSIMEEPA QEEMAAKFQP RLRPKAGGAS PGVAETIDAA CVATPEFGVS SADVVSQDTE  360
EDSHREGLSD GSCQKYIDEE AITTSGTGPP QDLDATVDLD SHAEMVNPHP DGSPLIIGEP  420
SAETTVKFQP YVRRKKGKGK SVSFVPPNVS HAHTPTDTNS ETSNSSHFCK DIATGESLSN  480
LPQQASEKIC ISGEHHPDDQ ECNDPENQYH EGEPYDHVIE QEPERDVRET GTPMILRNRG  540
KLQKDGIPEH TADDIMDEDF GEPPSDEQDN DSGDEYTARG KQKGRRKSRE KNINKEPSRG  600
TKRTSGDSTI EESQKQKLQK NKSKTSSRGQ KKTSKDSSVE QPEKKLTHRI RRKRMEEVKT  660
LLETPDHEID RMKLSVTHLR LLQEAKERIK ASFVGKEIPS GPSSSNHSTS QFGDMDDEYN  720
EQDNWDNDRT ENHVVENTTK LNYHSYMNRQ TRAKWSKSET DKFYEGLQQF GSDFAMIQHL  780
FPDKSRNQVR QKFKAEEKKH PMQVHDAIMH RSREVIKKLN IEDVQPDINN THEQEGTSNE  840
EDPGNKNIPG GLINEEEENG LDWSDKELDM HRSEVEEKEH VSTNDDDDDD LGDAKMEVVQ  900
CEDKVRGGGA RDDIVRLSTG RPSQSHHSLD PLALLSMAAS RLLPHTVSGL QLKVRCLFQG  960
SSAIEHAIKK VQMSILILEH CYQNMNSTYL LLVPYL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633004.1	0.0	uncharacterized protein LOC9267825
TrEMBL	A0A0E0GW79	0.0	A0A0E0GW79_ORYNI; Uncharacterized protein
STRING	ONIVA03G42290.3	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2595	29	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-33	MYB_related family protein