PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G42290.4

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 961aa MW: 106472 Da PI: 4.9446

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G42290.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.4e-08	717	758	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W++ E ++++++ +q+G++ ++ I + ++ ++++q++ ++ ONIVA03G42290.4 717 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 758 569*****************.*****.******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-10	708	764	IPR009057	Homeodomain-like
Pfam	PF15963	5.2E-25	710	782	No hit	No description
SMART	SM00717	7.5E-9	716	764	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-5	717	759	IPR009057	Homeodomain-like
CDD	cd00167	1.39E-6	719	759	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence Send to blast
MIDDEADFGN ITDATEGQAA AKFRPKARAK PRKTSLPSRS LAPHPTVEST DENVETLNKD 60 STSHEQSVDK KAASLGCHGN EADGNACASG GILDTPSEDV VTVSLGLVNN PDVALDSSTV 120 FASVHKVSQN EENNDDLSHV ATHKESMVVS DTQAPPTCCS AKTIDDLADF EGLCDDTHVE 180 EERVAKFQPK FRVKTSKATS KSQRTNQKAG VSTVDVVSQN KEDGKDQAGC NDKQLHSPTG 240 HQESVQISYS QAHLGTHNST IDDVANSDSI MEEPAQEEMA AKFQPRLRPK AGGASPGVAE 300 TIDAACVATP EFGVSSADVV SQDTEEDSHR EGLSDGSCQK YIDEEAITTS GTGPPQDLDA 360 TVDLDSHAEM VNPHPDGSPL IIGEPSAETT VKFQPYVRRK KGKGKSVSFV PPNVSHAHTP 420 TDTNSETSNS SHFCKDIATG ESLSNLPQQA SEKICISGEH HPDDQECNDP ENQYHEGEPY 480 DHVIEQEPER DVRETGTPMI LRNRGKLQKD GIPEHTADDI MDEDFGEPPS DEQDNDSGDE 540 YTARGKQKGR RKSREKNINK EPSRGTKRTS GDSTIEESQK QKLQKNKSKT SSRGQKKTSK 600 DSSVEQPEKK LTHRIRRKRM EEVKTLLETP DHEIDRMKLS VTHLRLLQEA KERIKASFVG 660 KEIPSGPSSS NHSTSQFGDM DDEYNEQDNW DNDRTENHVV ENTTKLNYHS YMNRQTRAKW 720 SKSETDKFYE GLQQFGSDFA MIQHLFPDKS RNQVRQKFKA EEKKHPMQVH DAIMHRSREV 780 IKKLNIEDVQ PDINNTHEQE GTSNEEDPGN KNIPGGLINE EEENGLDWSD KELDMHRSEV 840 EEKEHVSTND DDDDDLGDAK MEVVQCEDKV RGGGARDDIV RLSTGRPSQS HHSLDPLALL 900 SMAASRLLPH TVSGLQLKVR CLFQGSSAIE HAIKKVQMSI LILEHCYQNM NSTYLLLVPY 960 L

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence Send to blast

MIDDEADFGN ITDATEGQAA AKFRPKARAK PRKTSLPSRS LAPHPTVEST DENVETLNKD  60
STSHEQSVDK KAASLGCHGN EADGNACASG GILDTPSEDV VTVSLGLVNN PDVALDSSTV  120
FASVHKVSQN EENNDDLSHV ATHKESMVVS DTQAPPTCCS AKTIDDLADF EGLCDDTHVE  180
EERVAKFQPK FRVKTSKATS KSQRTNQKAG VSTVDVVSQN KEDGKDQAGC NDKQLHSPTG  240
HQESVQISYS QAHLGTHNST IDDVANSDSI MEEPAQEEMA AKFQPRLRPK AGGASPGVAE  300
TIDAACVATP EFGVSSADVV SQDTEEDSHR EGLSDGSCQK YIDEEAITTS GTGPPQDLDA  360
TVDLDSHAEM VNPHPDGSPL IIGEPSAETT VKFQPYVRRK KGKGKSVSFV PPNVSHAHTP  420
TDTNSETSNS SHFCKDIATG ESLSNLPQQA SEKICISGEH HPDDQECNDP ENQYHEGEPY  480
DHVIEQEPER DVRETGTPMI LRNRGKLQKD GIPEHTADDI MDEDFGEPPS DEQDNDSGDE  540
YTARGKQKGR RKSREKNINK EPSRGTKRTS GDSTIEESQK QKLQKNKSKT SSRGQKKTSK  600
DSSVEQPEKK LTHRIRRKRM EEVKTLLETP DHEIDRMKLS VTHLRLLQEA KERIKASFVG  660
KEIPSGPSSS NHSTSQFGDM DDEYNEQDNW DNDRTENHVV ENTTKLNYHS YMNRQTRAKW  720
SKSETDKFYE GLQQFGSDFA MIQHLFPDKS RNQVRQKFKA EEKKHPMQVH DAIMHRSREV  780
IKKLNIEDVQ PDINNTHEQE GTSNEEDPGN KNIPGGLINE EEENGLDWSD KELDMHRSEV  840
EEKEHVSTND DDDDDLGDAK MEVVQCEDKV RGGGARDDIV RLSTGRPSQS HHSLDPLALL  900
SMAASRLLPH TVSGLQLKVR CLFQGSSAIE HAIKKVQMSI LILEHCYQNM NSTYLLLVPY  960
L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633004.1	0.0	uncharacterized protein LOC9267825
TrEMBL	A0A0E0GW80	0.0	A0A0E0GW80_ORYNI; Uncharacterized protein
STRING	ONIVA03G42290.3	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	6e-33	MYB_related family protein