PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G43670.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28643.4 Da    PI: 5.2341
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G43670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.88.9e-261868151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krie+ ++rqvtfskRr+g lKKA+EL vLCda+v v++fs +gkl++++s
  ONIVA03G43670.1 18 KRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCS 68
                     79***********************************************96 PP
2K-box58.92.1e-20891791099
            K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslke.LqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++++ e++  e+++L++ei++L+ ++R+  GedL+s s  + L qL+ qLe+sl+k+ ++K+el+ +q+e+++++ + ++e+n+ L +++ 
  ONIVA03G43670.1  89 TNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDaLSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMMS 179
                      456678999****************************97655*******************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-381069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.7261070IPR002100Transcription factor, MADS-box
CDDcd002656.17E-371171No hitNo description
SuperFamilySSF554553.27E-271178IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-261232IPR002100Transcription factor, MADS-box
PfamPF003198.4E-241966IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-263247IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-264768IPR002100Transcription factor, MADS-box
PfamPF014864.4E-2090178IPR002487Transcription factor, K-box
PROSITE profilePS5129713.67793184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDRRRGEVAM GRGKIEMKRI EDATRRQVTF SKRRAGFLKK ANELAVLCDA QVGVVVFSDK  60
GKLFDFCSPP VICFTVMRSP PENTRLQETN RDDEQMVMEI TRLRNEIDQL EASLRRQTGE  120
DLSSVSTVDA LSQLQLQLES SLSKVHARKD ELMSQQLEDM RRMHQTVHEQ NNFLCRMMSE  180
NWHSENWQSP GSGEASAMEA LTMLPPPAAA TTAAEAFNCF FPEEEKGVAA SSTLLQLWPQ  240
PHDGDQPDLR LW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-151089187MEF2 CHIMERA
6byy_B1e-151089187MEF2 CHIMERA
6byy_C1e-151089187MEF2 CHIMERA
6byy_D1e-151089187MEF2 CHIMERA
6bz1_A2e-151089187MEF2 CHIMERA
6bz1_B2e-151089187MEF2 CHIMERA
6bz1_C2e-151089187MEF2 CHIMERA
6bz1_D2e-151089187MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1740930.0AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882177.11e-106MADS-box transcription factor 30 isoform X7
SwissprotQ655V41e-108MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A0E0GWR90.0A0A0E0GWR9_ORYNI; Uncharacterized protein
STRINGONIVA03G43670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-36MIKC_MADS family protein