PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G00840.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 142aa    MW: 16725 Da    PI: 9.9985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G00840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-085341948
                     TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +G g+W++ ar+  ++Rt+k+c++rw++yl
  ONIVA04G00840.1  5 HGEGRWNALARCAWLKRTGKSCRLRWLNYL 34
                     9999**********99************97 PP
2Myb_DNA-binding40.46.7e-134083146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg++T++E++l+++++  +G++  ++Ia++++ gRt++++k++w++
  ONIVA04G00840.1 40 RGNMTAQEQLLILELHGWWGNR-RSKIAQHLP-GRTDNEIKNYWRT 83
                     89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.329134IPR017877Myb-like domain
SuperFamilySSF466891.88E-20481IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-14441IPR009057Homeodomain-like
PfamPF002497.3E-6534IPR001005SANT/Myb domain
CDDcd001671.21E-4534No hitNo description
PROSITE profilePS5129417.3133589IPR017930Myb domain
SMARTSM007173.7E-83987IPR001005SANT/Myb domain
PfamPF002493.2E-104083IPR001005SANT/Myb domain
CDDcd001672.35E-74283No hitNo description
Gene3DG3DSA:1.10.10.604.8E-194288IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MLDCHGEGRW NALARCAWLK RTGKSCRLRW LNYLRPDVSR GNMTAQEQLL ILELHGWWGN  60
RRSKIAQHLP GRTDNEIKNY WRTRVQKHAK HLNCDVNSQQ FNDLMRYLWM PRLLDRIHRS  120
QSQSHDTDDA DLSAASCITV TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1518721106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034551e-178AK103455.1 Oryza sativa Japonica Group cDNA clone:J033129J22, full insert sequence.
GenBankHQ8588211e-178HQ858821.1 Oryza sativa Japonica Group isolate UT1319 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645266.17e-84transcription factor JAMYB-like
SwissprotQ2QZJ82e-68JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A0E0GX921e-101A0A0E0GX92_ORYNI; Uncharacterized protein
STRINGONIVA04G00840.11e-102(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-64myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]