PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G03680.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 130aa    MW: 14367.8 Da    PI: 5.957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G03680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.72.3e-211061155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+y+GVr+++ +g+++AeIrdp  +    r++lg+f+taeeAa+a+++a+ +++g
  ONIVA04G03680.1 10 SKYRGVRRRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEEAARAYDRAAFAMKG 61
                     89********.**********8333..4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.19E-311069No hitNo description
PfamPF008471.2E-151061IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-241069IPR016177DNA-binding domain
PROSITE profilePS5103224.5131169IPR001471AP2/ERF domain
SMARTSM003803.6E-361175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-321169IPR001471AP2/ERF domain
PRINTSPR003673.6E-121223IPR001471AP2/ERF domain
PRINTSPR003673.6E-123551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MEDDKKEAAS KYRGVRRRPW GKFAAEIRDP ERGGSRVWLG TFDTAEEAAR AYDRAAFAMK  60
GAMAVLNFPG RTSSTGSSSS SSSSSTPPAP VTTSRHCADT TEKVELVYLD DKVLDELLAE  120
DYSYRNNNNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-291274668ATERF1
3gcc_A8e-291274668ATERF1
5wx9_A9e-291011313114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635372.15e-79ethylene-responsive transcription factor ERF098
SwissprotQ9LTC54e-34ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0E0GY743e-90A0A0E0GY74_ORYNI; Uncharacterized protein
TrEMBLA2XR353e-90A2XR35_ORYSI; Uncharacterized protein
STRINGONIVA04G03680.15e-91(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]