PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G06580.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 201aa    MW: 21443.1 Da    PI: 11.1404
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G06580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.7e-10107151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+  +I+r +   Rt+ q+ s+ qky
  ONIVA04G06580.1 107 PWTEEEHRLFLLGLDKFGKGDLQSISRNFVISRTPTQVASHAQKY 151
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.22100156IPR017930Myb domain
SuperFamilySSF466892.24E-16101157IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-16104154IPR006447Myb domain, plants
SMARTSM007175.2E-8104154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-8105150IPR009057Homeodomain-like
CDDcd001677.36E-8107152No hitNo description
PfamPF002491.7E-8107151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAEGADDGDG APGRSSPAVC VRGGARRPSE RGEELAGRPC AGRSSHAVLA RGRSCSSPVI  60
GSSGSAVGDC PRLPVYTNAW RKSGGGGRYD GGKCCSKAEQ KRRKGIPWTE EEHRLFLLGL  120
DKFGKGDLQS ISRNFVISRT PTQVASHAQK YFIRLNSMNR DRRRSSIHDI TSVTAGDVAA  180
QQGPITGQAK AALRRRSGHR A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6067291e-145AL606729.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062B06, complete sequence.
GenBankAP0149601e-145AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8552271e-145CR855227.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159H11-OSIGBa0137A07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565794.19e-62transcription factor MYBS1
TrEMBLA0A0E0GZA41e-143A0A0E0GZA4_ORYNI; Uncharacterized protein
STRINGONIVA04G06580.11e-144(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-39MYB family protein