PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G06690.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 430aa    MW: 46756.2 Da    PI: 10.0278
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G06690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.3e-1424119499
                      E-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   4 vltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      vl+ps+  k   +++  + a++      gg  ++  t ++ ++ g+ W+v + +r ++gr +l++GW eF+ a+gL +g fvv+++ g  ++ l
  ONIVA04G06690.1  24 VLVPSSFRK---MRICDELAAQLgvgvgGGGAPRAATARVASPLGKAWDVGV-VRDGDGRAFLGRGWAEFAAAHGLGVGWFVVLRHGG-GGGVL 112
                      555555444...568888887779999955566888****************.688888899***********************866.78878 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                       v +f++
  ONIVA04G06690.1 113 AVEAFDT 119
                      9988876 PP
2B351.32e-161552341496
                      T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + +++p kf++++  g++ +s + ++ ++ g+sW+v+l  +k +++++l++GW +F + +g+  gD+v+F+++g+  f  +++v
  ONIVA04G06690.1 155 DKMRIPDKFVRDYiTGENLNSNMAIILSPLGKSWRVEL--DKDQSGVFLGGGWLQFLSFHGISRGDVVIFRYEGNLVF--KISV 234
                      5699**********555567889999************..*******************************9986666..5555 PP
3B377.61.3e-24322417184
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfv 80 
                      ++k++++++vl++++l+l ++f+e++g+ +e+s++l++ d+++             rsWev+   r+++++ y+l++GW++F+++ng+++gD++
  ONIVA04G06690.1 322 WIKKEINEYVLERCILSLARTFCESIGLAEESSIKLMMVDTTStqgdqggssssssRSWEVTG--RRYKDAcYLLGAGWRRFCEDNGVRSGDVC 413
                      789*************************************99999******************..9999999********************** PP

                      EEEE CS
               B3  81 vFkl 84 
                      vF++
  ONIVA04G06690.1 414 VFTV 417
                      **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.008121120IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1222122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-1223122IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-1223118No hitNo description
PfamPF023621.3E-1123118IPR003340B3 DNA binding domain
PROSITE profilePS508639.95365120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-19138239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20139238IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.775142238IPR003340B3 DNA binding domain
CDDcd100178.87E-18143235No hitNo description
SMARTSM010195.4E-15145238IPR003340B3 DNA binding domain
PfamPF023623.9E-14155230IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-14318428IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-16319428IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.801322430IPR003340B3 DNA binding domain
PfamPF023622.7E-14322418IPR003340B3 DNA binding domain
SMARTSM010191.3E-4323428IPR003340B3 DNA binding domain
CDDcd100174.96E-7327416No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MGSRGDHGGG GGGRGAARAT QLKVLVPSSF RKMRICDELA AQLGVGVGGG GAPRAATARV  60
ASPLGKAWDV GVVRDGDGRA FLGRGWAEFA AAHGLGVGWF VVLRHGGGGG VLAVEAFDTT  120
CCLRVFGAPP AEAGRATDTS RKPQFLTVLL PGIMDKMRIP DKFVRDYITG ENLNSNMAII  180
LSPLGKSWRV ELDKDQSGVF LGGGWLQFLS FHGISRGDVV IFRYEGNLVF KISVFGPNGR  240
QKDFKAKGIS IHQGTGEQQE APSFSRRKCN NKKKSRFGED DGNQQEMPCS RKGSGNKGRT  300
SDRETKRMRK TRSVYEIGPR SWIKKEINEY VLERCILSLA RTFCESIGLA EESSIKLMMV  360
DTTSTQGDQG GSSSSSSRSW EVTGRRYKDA CYLLGAGWRR FCEDNGVRSG DVCVFTVLDT  420
TLWRVDIERC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629631e-159AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149601e-159AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-159CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551081e-159CR855108.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0111I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881011.10.0putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS750.0Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A0E0GZC20.0A0A0E0GZC2_ORYNI; Uncharacterized protein
STRINGONIVA04G06690.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-17B3 family protein