PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G06980.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 262aa MW: 28069.6 Da PI: 8.2454

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G06980.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.8	2.6e-10	90	137	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq ONIVA04G06980.2 90 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 137 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.53E-11	84	141	No hit	No description
SuperFamily	SSF47459	2.62E-17	84	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	86	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.612	86	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-7	90	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	92	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MNPTTAAAAD QPSKPSAAAA RKRKSSAKPK ASSSSLPTAT ATTNASPKRS KVAAGAGDDG 60 DGDADAAEEK PEPAKDYIHV RARRGQATDS HSLAERVRRE RISERMKLLQ SLVPGCNKIT 120 GKALMLDEII NYVQSLQRQV EFLSMKLATM NPQLDFDSHY MPSKDMSHMP VPAYPSGDPT 180 TTTAFSYTGS PATADPFTVY NCWELDLHTA MQMGATPGLS QDVPIATMAP SPSPLPHHPP 240 LHGFYGGQQQ QGTTVNHMKA EP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO681395	0.0	FO681395.1 Oryza rufipogon (W1943) Awn-1(An-1) full-length cDNA sequence: OR_W1943_cDNA_An-1, PCR product.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635665.2	1e-135	LOW QUALITY PROTEIN: transcription factor bHLH62
Swissprot	Q9SRT2	2e-52	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0E0GZG0	0.0	A0A0E0GZG0_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0GZG1	0.0	A0A0E0GZG1_ORYNI; Uncharacterized protein
STRING	ORUFI04G09760.1	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-50	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]