PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G08240.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 212aa MW: 22326.2 Da PI: 6.2715

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G08240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.7	7.5e-12	96	176	4	89
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grse 89 ++ +s+v ++v+p++fa + ++ t + +grsW +++ ++++ l++GW++F+ +n+L+ gD +vF+l g + ONIVA04G08240.1 96 IMCKSHVQPPFQVVVPRSFAPLL---PSRT-TPATLSWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELLvGGGG 176 677899999999******433...3333.44446789****..88888899*********************5423222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.34E-15	90	189	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.7E-15	90	190	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.25E-13	91	189	No hit	No description
PROSITE profile	PS50863	12.492	93	191	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-9	94	176	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MRAATALPSI PSSSSPSPMA SDPTELRCSS PESSGDAGAE DPAAVDAAEE SGGEGGSGHI 60 AAGTEAAPPR PPEPEPEKVA RHGVLPLLGK PYFTCIMCKS HVQPPFQVVV PRSFAPLLPS 120 RTTPATLSWR GRSWGMRFTG GRLIQRLEAG WRGFAVDNDL RLGDGCVFEL LVGGGGEQER 180 VEFRVQVLRA EIPARIRGRA GGYTSATPIV ID

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119999	0.0	AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635251.1	1e-150	B3 domain-containing protein Os04g0386900
Swissprot	Q7XLP4	1e-151	Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBL	A0A0D9ZJY6	1e-149	A0A0D9ZJY6_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0GZV7	1e-149	A0A0E0GZV7_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0P899	1e-149	A0A0E0P899_ORYRU; Uncharacterized protein
STRING	OGLUM04G10060.1	1e-150	(Oryza glumipatula)
STRING	ORUFI04G11550.1	1e-150	(Oryza rufipogon)
STRING	ONIVA04G08240.1	1e-150	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8954	35	45

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]