PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G08300.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 73aa    MW: 8218.59 Da    PI: 9.7172
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G08300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61.1e-151153244
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     rie+  +r + f kR++g+ KKAeEL vLCda v  +++s +g
  ONIVA04G08300.1 11 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVLSCSG 53
                     8**************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-12264IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.614253IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-16354IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-12424IPR002100Transcription factor, MADS-box
PfamPF003193.4E-181153IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-122439IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-123960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAVLC DAHVGFVVLS CSGDDANPHH  60
FAAPATHLEL LFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550971e-106CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.11e-39truncated transcription factor CAULIFLOWER D-like isoform X1
RefseqXP_015637118.11e-39truncated transcription factor CAULIFLOWER D-like isoform X2
RefseqXP_025880634.16e-40MADS-box transcription factor 33-like isoform X3
RefseqXP_025880635.17e-40MADS-box transcription factor 33-like isoform X4
TrEMBLA0A0E0GZW31e-44A0A0E0GZW3_ORYNI; Uncharacterized protein
STRINGONIVA04G08300.12e-45(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-14AGAMOUS-like 79