PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G11980.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 158aa    MW: 18511.8 Da    PI: 9.2348
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G11980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.11.1e-131038230
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHH CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvL 30
                     rien   rqv f+kRr g+lKKA+ELSvL
  ONIVA04G11980.1 10 RIENPVHRQVIFCKRRMGLLKKAKELSVL 38
                     8***************************9 PP
2K-box58.72.5e-20641481497
            K-box  14 aeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          qq++  L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le  +++iRs+K++l+ ++ie l++ke  l+ +n  L+++
  ONIVA04G11980.1  64 PMVIQQDVLFLRREVDLLQNSLRYMYGEkDINHMNLGELQSLESNLEVWVNNIRSTKMQLMSREIEMLKNKEGILKAANDILQER 148
                      45579**********************868**************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-12150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.175138IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-14141IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-14323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-111038IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-142338IPR002100Transcription factor, MADS-box
PfamPF014867.6E-2459149IPR002487Transcription factor, K-box
PROSITE profilePS5129712.58364156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVI FCKRRMGLLK KAKELSVLNM EGLIERYKCN LPEAQVESTE  60
QNIPMVIQQD VLFLRREVDL LQNSLRYMYG EKDINHMNLG ELQSLESNLE VWVNNIRSTK  120
MQLMSREIEM LKNKEGILKA ANDILQERVL LAINSCIL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288322.12e-78MADS-box transcription factor 26-like
SwissprotQ2QW552e-49MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLA0A0E0H1B61e-109A0A0E0H1B6_ORYNI; Uncharacterized protein
STRINGONIVA04G11980.11e-110(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-36AGAMOUS-like 12