PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G14730.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 849aa    MW: 91897.4 Da    PI: 9.131
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G14730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.52.8e-26513581270
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                      W ++e+l+Li++rrem+++++++k++k+lWe++s++mre+gf rsp++C++kw+nl k++kk + ++++
  ONIVA04G14730.1 513 WVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEFKKARSHARG 581
                      ***************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.8E-51969IPR001810F-box domain
PROSITE profilePS500908.293505569IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.2E-4506573IPR009057Homeodomain-like
SMARTSM007172.5E-5509571IPR001005SANT/Myb domain
CDDcd122033.78E-29511576No hitNo description
PfamPF138371.3E-17512583No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MSSSSSSPRA PGDRKRCRRA SGPVPRWASL PEDLVDLVAS RLLAGGDLLD YVRFRAVCTS  60
WRSGTASPRG RGVADRRFHP RRWMMLPEGH GLYPGHPSLR GYARFLNLDT GTLVRARIPL  120
LRDGYVAIDS VDGLLLLLLD PDPNQEGAVR LLRPFTGDTA ELPPLGTVLP HLGSRLLDCP  180
APATGAGAGA ITVLLALSVV SRVAFATSLD RQWSLSTYEC VTLSSPIASH GKIYLMHTDR  240
SCGEKMHQIL RIDHPPAAAQ DGSGSGAGRA LQEPKLVATI PARKLDHFQG LVECGSEILV  300
LGYKNWSTSR ISVFKLADLV LQRFMPIKSI EGHTLFIGER NISVSSKILP TVKGDNLVYL  360
NSGLVKYHLS SGSLSLAIDN CSLYGRAPGP SSLVHYIYSC CIRNRWELGP GRAERPSHLP  420
RVPPGSPRLR SPTAATTAPV TSPIAGFPFA HGTTPRAPPR PAAAMLLSGP SPQQPTPPLL  480
LPESSGEDGG HDSSSRAAAS GGGGGPKKRA ETWVQDETLC LIALRREMDS HFNTSKSNKH  540
LWEAISARMR EQGFDRSPTM CTDKWRNLLK EFKKARSHAR GGGGGGVGGG GAGTGGGNCP  600
AKMACYKEID DLLKRRGKPT GGGGAAVGSG AVKSPTVTSK IDSYLQFDKG FEDASIPFGP  660
VEASGRSLLS VEDRLEPDSH PLALTADAVA TNGVNPWNWR DTSTNGGDNQ VTFGGRVILV  720
KWGDYTKRIG IDGTAEAIKE AIKSAFGLRT RRAFWLEDED EVVRSLDRDM PVGTYTLHLD  780
TGMTIKLYMF ENDEVRTEDK TFYTEEDFRD FLSRRGWTLL REYSGYRIAD TLDDLRPGVI  840
YEGMRSLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A4e-38507608186DNA binding protein GT-1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032960.0AK103296.1 Oryza sativa Japonica Group cDNA clone:J033125B02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0H2B90.0A0A0E0H2B9_ORYNI; Uncharacterized protein
STRINGONIVA04G14730.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-128Trihelix family protein