PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G15310.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 523aa    MW: 55501.8 Da    PI: 4.9905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G15310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.8e-1756103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WTt Ed  lv+ v+q+G g+W+++ r+ g+ R++k+c++rw ++l
  ONIVA04G15310.1  56 KGPWTTAEDAVLVQHVRQHGEGNWNAVQRMTGLLRCGKSCRLRWTNHL 103
                      79******************************99***********996 PP
2Myb_DNA-binding50.93.7e-16109152146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
  ONIVA04G15310.1 109 KGSFSPDEELLIAQLHAQLGNK-WARMASHLP-GRTDNEIKNYWNT 152
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.80451103IPR017930Myb domain
SMARTSM007179.2E-1455105IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-2855150IPR009057Homeodomain-like
PfamPF002494.1E-1456103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2157110IPR009057Homeodomain-like
CDDcd001677.64E-1158103No hitNo description
PROSITE profilePS5129422.55104158IPR017930Myb domain
SMARTSM007178.0E-15108156IPR001005SANT/Myb domain
PfamPF002494.2E-15109152IPR001005SANT/Myb domain
CDDcd001677.87E-11111152No hitNo description
Gene3DG3DSA:1.10.10.603.3E-24111157IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MEEMIKPALA PASSEEEKEV VATAATGERR HEEATAGREE QEEEEEEEEA PVVLKKGPWT  60
TAEDAVLVQH VRQHGEGNWN AVQRMTGLLR CGKSCRLRWT NHLRPNLKKG SFSPDEELLI  120
AQLHAQLGNK WARMASHLPG RTDNEIKNYW NTRTKRRQRA GLPVYPPDVQ LHLAFAKRCR  180
YDDFSSPLSS PQQSAGSNVL SMDAADAAGA ASSGYTSARP PPLDLAGQLA MGSRPVQLLA  240
ATPFSAPSSP WGKPFARNAQ FFQFPHSSPV SPTTPTGPVQ VHPVTPELSL GYGLHAGDRA  300
RLPPVSPSPG ARAELPSSQL RPSMAPTTAA AAATGGLVGG ALQDHPNAAS LEAMLQELHD  360
AIKIEPPAPP ENRGTEEEGG GGGGNLRGFL HEQIFDKLMP IKSGDFCIVG LHSVLISLQF  420
PGDGKPEVEL KDDIETLFDL IIPATFPAAA PEPAAAATAA SAAPNHSSSV SQHSSDDQDH  480
SNGADVVLDL PILTGGGGGS SEQDDWSLDG AACQWDNISG GIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-295415725127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629365.10.0transcription factor MYB65
TrEMBLA0A0E0H2J70.0A0A0E0H2J7_ORYNI; Uncharacterized protein
STRINGONIVA04G15310.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.28e-66myb domain protein 101