PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G19030.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 752aa    MW: 83424.5 Da    PI: 7.0578
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G19030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.7e-103176146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ v+ +G+ +W++I ++  + Rt+k+c++rw +
  ONIVA04G19030.1 31 KGPWMAEEDEVLLEHVRTHGPMDWSSIRSKGLLPRTGKSCRLRWVN 76
                     79******************99*****8876677**********87 PP
2Myb_DNA-binding41.82.4e-1387127345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++T+eE+   +++ +q+G++ W++Ia +++ gRt++++k++w 
  ONIVA04G19030.1  87 KFTAEEERVVIELQAQFGNK-WARIATYLQ-GRTDNDVKNFWS 127
                      79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3572678IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-182879IPR009057Homeodomain-like
SuperFamilySSF466892.07E-2529126IPR009057Homeodomain-like
SMARTSM007176.6E-93080IPR001005SANT/Myb domain
CDDcd001671.64E-93378No hitNo description
PfamPF139215.1E-103483No hitNo description
PROSITE profilePS5129420.31979134IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-1780132IPR009057Homeodomain-like
SMARTSM007179.7E-1284132IPR001005SANT/Myb domain
CDDcd001671.21E-987126No hitNo description
PfamPF002491.5E-1187127IPR001005SANT/Myb domain
SuperFamilySSF1014474.97E-5321331No hitNo description
SuperFamilySSF465659.94E-35344441IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.7E-36344437IPR001623DnaJ domain
HamapMF_0115226.753345734IPR012724Chaperone DnaJ
SMARTSM002711.4E-27347401IPR001623DnaJ domain
PfamPF002261.4E-22348406IPR001623DnaJ domain
PROSITE profilePS5007623.567348409IPR001623DnaJ domain
CDDcd062576.45E-21349398IPR001623DnaJ domain
PRINTSPR006251.9E-21350368IPR001623DnaJ domain
PRINTSPR006251.9E-21381401IPR001623DnaJ domain
PROSITE patternPS006360386405IPR018253DnaJ domain, conserved site
PRINTSPR006251.9E-21401420IPR001623DnaJ domain
SuperFamilySSF494931.57E-17453487IPR008971HSP40/DnaJ peptide-binding
Gene3DG3DSA:2.60.260.201.8E-26453482No hitNo description
CDDcd107472.56E-42453679No hitNo description
PfamPF015561.1E-37456677IPR002939Chaperone DnaJ, C-terminal
PROSITE profilePS5118822.025469553IPR001305Heat shock protein DnaJ, cysteine-rich domain
SuperFamilySSF579383.27E-16479551IPR001305Heat shock protein DnaJ, cysteine-rich domain
PfamPF006841.1E-14482547IPR001305Heat shock protein DnaJ, cysteine-rich domain
CDDcd107199.13E-19482548No hitNo description
Gene3DG3DSA:2.10.230.108.7E-17483547IPR001305Heat shock protein DnaJ, cysteine-rich domain
Gene3DG3DSA:2.60.260.201.8E-26550594No hitNo description
SuperFamilySSF494931.57E-17554597IPR008971HSP40/DnaJ peptide-binding
SuperFamilySSF494931.18E-17598679IPR008971HSP40/DnaJ peptide-binding
Gene3DG3DSA:2.60.260.201.2E-25598678No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0009408Biological Processresponse to heat
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0031072Molecular Functionheat shock protein binding
GO:0046872Molecular Functionmetal ion binding
GO:0051082Molecular Functionunfolded protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MARAPGGVRR RSGRRGAGGG GAGGGGEALR KGPWMAEEDE VLLEHVRTHG PMDWSSIRSK  60
GLLPRTGKSC RLRWVNKLRP NLKSGCKFTA EEERVVIELQ AQFGNKWARI ATYLQGRTDN  120
DVKNFWSTRQ KRLARLLRGP LPAARPNKHN SGKGKAPSSS SLDSQTATFH QSSASLDQAS  180
LEGNSLGWQC REAAPFMGYD QACSGFFAFE GPLPLQLLPP ADGEASSSNA AQSAPPPLLF  240
DQPPYPLINF PGWPERYVDV GHGFVDAGAM DGLAYQELLP MVQSVPMIMP FFGMECAHDA  300
VKHGAFDDLP PNMFDDAVDQ PPPPPPPPPP PSPSPSPSRD DVLSNNTKYY EVLGVPKTAS  360
KDELKKAYRK AAIKNHPDKG GDPEKFKELS QAYEVLTDPE KRDIYDQYGE DALKDGMGGG  420
SDFHNPFDIF EQFFGGGAFG GSSSRVRRQR RGEDVVHTLK VSLEDVYNGS MKKLSLSRNI  480
LCPKCKGKGT KSEAPATCYG CHGVGMRNIM RQIGLGMIQH MQTVCPECRG SGEIISDRDK  540
CTNCRASKVI QEKKVLEVHI EKGMQHGQKI VFQGEADEAP DTVTGDIVFI LQVKVHPRFK  600
RKYDDLFIER TISLTEALCG FQFILTHLDS RQLLIKANPG EIIKPGQHKA INDEGMPHHG  660
RPFMKGRLFV EFNVEFPESG VLSRDQCRAL EMILPPKPGH QLSDMDLDQC EETTMHDVNI  720
EEEMRRKQYQ RKQEAYDEDE EEDAPRVQCA QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1nlt_A1e-604436912248Mitochondrial protein import protein MAS5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in disease resistance. Acts as negative regulator of innate immunity to the rice blast fungus (Magnaporthe oryzae). Acts as negative regulator of the pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) response through the inhibition of reactive oxygen species (ROS) accumulation and expression of defense-related genes. May function via the ubiquitin-proteasome degradation pathway. {ECO:0000269|PubMed:28220688}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by a compatible race of the rice blast fungus (Magnaporthe oryzae). {ECO:0000269|PubMed:28220688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019560.0AK101956.1 Oryza sativa Japonica Group cDNA clone:J033075M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635751.10.0chaperone protein dnaJ A6
RefseqXP_015635752.10.0chaperone protein dnaJ A6
SwissprotQ0JB880.0DJA6_ORYSJ; Chaperone protein dnaJ A6
TrEMBLA0A0E0H3W50.0A0A0E0H3W5_ORYNI; Uncharacterized protein
STRINGONIVA04G19030.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-54MYB family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lu L, et al.
    Pc4, a putative movement protein of Rice stripe virus, interacts with a type I DnaJ protein and a small Hsp of rice.
    Virus Genes, 2009. 38(2): p. 320-7
    [PMID:19130198]
  3. Sarkar NK,Thapar U,Kundnani P,Panwar P,Grover A
    Functional relevance of J-protein family of rice (Oryza sativa).
    Cell Stress Chaperones, 2013. 18(3): p. 321-31
    [PMID:23160806]
  4. Zhong X,Yang J,Shi Y,Wang X,Wang GL
    The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.
    Mol. Plant Pathol., 2018. 19(3): p. 607-614
    [PMID:28220688]