PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G19090.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 217aa MW: 23014.6 Da PI: 5.2825

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G19090.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.9	1.2e-18	46	95	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g ONIVA04G19090.1 46 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 95 69**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	5.82E-22	46	104	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.985	46	103	IPR001471	AP2/ERF domain
Pfam	PF00847	1.8E-12	46	95	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-36	46	109	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-32	46	104	IPR001471	AP2/ERF domain
CDD	cd00018	1.40E-31	47	105	No hit	No description
PRINTS	PR00367	9.3E-11	47	58	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.3E-11	69	85	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MDDSHDLASP TSPDTASSSS SSTSTSSSSA TVAPKKRPRN DGRHPTYRGV RMRSWGKWVS 60 EIREPRKKSR IWLGTFATAE MAARAHDVAA LAIKGRTAHL NFPDLAHLLP RPATAAPKDV 120 QAAALLAAAA ADFPSVSVDA NAKSPDTCSV ASAASPQPPP PDAEADPDST LFDLPDLLLD 180 LRYETSSSLS CGASWAVDDD VAGGVVFRLE EPMLWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-17	44	103	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634439.1	1e-153	ethylene-responsive transcription factor ERF038
Swissprot	Q8LBQ7	2e-49	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A0D9ZNW9	1e-152	A0A0D9ZNW9_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0H3X4	1e-152	A0A0E0H3X4_ORYNI; Uncharacterized protein
TrEMBL	A2XW68	1e-152	A2XW68_ORYSI; Uncharacterized protein
TrEMBL	I1PNM1	1e-152	I1PNM1_ORYGL; Uncharacterized protein
TrEMBL	Q7XU26	1e-152	Q7XU26_ORYSJ; OSJNBb0034G17.6 protein
STRING	OGLUM04G20790.1	1e-152	(Oryza glumipatula)
STRING	OS04T0550200-01	1e-152	(Oryza sativa)
STRING	ONIVA04G19090.1	1e-152	(Oryza nivara)
STRING	ORGLA04G0179000.1	1e-152	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP159	35	354

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	1e-45	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]