PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G19300.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 496aa    MW: 51674.6 Da    PI: 4.5402
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G19300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.7e-08379405227
                      -S---SGGGGTS.--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartG.tCkyGdrCkFaHgp 27 
                      kt+lC  ++  G  C++G++Ck+aHg+
  ONIVA04G19300.1 379 KTKLCAEYYSRGlGCPRGNTCKYAHGE 405
                      7999988888888************96 PP
2zf-CCCH26.31.2e-08440466127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt+lC++f  +G C + ++C+FaHg+
  ONIVA04G19300.1 440 YKTKLCKTFTSGGLCLFAANCRFAHGE 466
                      9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-6376410IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479377406IPR000571Zinc finger, CCCH-type
SMARTSM003560.018377405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-10379409IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6379405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-12438469IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-8439469IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202439467IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6439466IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-5440466IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774469496IPR000571Zinc finger, CCCH-type
SMARTSM003560.45470496IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5470495IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MADSEDGDHA ATTTTEQRYD DDGHLVPSSG GQEEEGSGGR DVVVPGGHVA EDYRSGVGVP  60
VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSCSMGA GTSATRRLPA  120
TGFGALPTSS MAEDSADHAD DDHLAEEEEE EEEEHYIDDG PLVPSSGGQE EEGSGGRHVF  180
VPGGHDGEED HPDDLVADLD LDLLVDGVVG PVPGGHLNAD APAFVPTTRG RQDLYSALSS  240
SAPAAGYRYR HYITSSALAE AGHVSPFLGL PYATAFDSPL DRELVGPSSA PPPCSAASRA  300
WLVRCSSPLS DSEWTRRSIL AREAAHTPAS TVTGRGRFEF VPIPGAPYAP PPSFAPIAAG  360
AGPAARPQQQ LAFGLEEHKT KLCAEYYSRG LGCPRGNTCK YAHGEDDLRL VVAVSSLADA  420
GEGSSSSDSS SAALGGEDKY KTKLCKTFTS GGLCLFAANC RFAHGEVELG KKEPCWYFFS  480
GQTCPRGDTC GFRHSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882954.10.0putative zinc finger CCCH domain-containing protein 48
SwissprotQ8GVZ80.0C3H48_ORYSJ; Putative zinc finger CCCH domain-containing protein 48
TrEMBLA0A0E0H3Z70.0A0A0E0H3Z7_ORYNI; Uncharacterized protein
STRINGONIVA04G19300.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173811111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-08C3H family protein