PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G21020.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 237aa    MW: 25041.6 Da    PI: 10.24
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G21020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.92.3e-25141185145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+
  ONIVA04G21020.1 141 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEA 185
                      69***************************************9987 PP
2QLQ54.24.5e-1974110137
              QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k
  ONIVA04G21020.1  74 SALTFMQRQELEQQVLIYRYFAAGAPVPVHLVLPIWK 110
                      799*********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.1E-674110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.21775110IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-1175109IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.072141185IPR014977WRC domain
PfamPF088799.4E-21142183IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLAEGRQVYS PPPPPPSKLP RLSGTDPTDG VVTMAAPSPL VLGLGLGLGG SGSDSSGSDA  60
EASAATVREA RPPSALTFMQ RQELEQQVLI YRYFAAGAPV PVHLVLPIWK SIAAASSFGP  120
QSFPSLTGLG SLCFDYRSSM EPEPGRCRRT DGKKWRCSRD VVPGHKYCER HVHRGRGRSR  180
KPMEASAAVA PTYLPVRPAL HTVATLATSA PSLSHLGFSS ASKVLLAHTT TGTTRAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182GRGRSRKPM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109340.0AK110934.1 Oryza sativa Japonica Group cDNA clone:002-173-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635359.11e-139growth-regulating factor 12
SwissprotQ6AWX71e-140GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLA0A0E0H4P51e-169A0A0E0H4P5_ORYNI; Uncharacterized protein
TrEMBLB8AT601e-169B8AT60_ORYSI; Uncharacterized protein
STRINGONIVA04G21020.11e-170(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.12e-37growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]