PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G23170.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 224aa    MW: 24878.2 Da    PI: 7.5025
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G23170.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like301.1e-091203655
          G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                     m++kgLtl+h+kSHLQkYRl
  ONIVA04G23170.2  1 MGMKGLTLYHLKSHLQKYRL 20
                     899****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-8122IPR009057Homeodomain-like
PfamPF143791.2E-2167111IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGMKGLTLYH LKSHLQKYRL GRQSKKSAGL ELAVADSGEF TAEGISFSIG APPRNPAGGN  60
NTGEIPLADA LKYQVEVQRK LQEQLEVQKK LQMRIEAQGR YLKEILEKAQ KNISLDANGS  120
ANLSSTRSQI TDINLALSGF MDNATQVQEE NNELMKPISD DNLKVNNLGF QLYHLGSQES  180
KDVKCTPKTE ELLLLDLNIQ GGYELSSRGM QGCELDLKIN QQRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064000.0AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635409.11e-162myb family transcription factor PHL11 isoform X2
TrEMBLA0A0E0H5H41e-162A0A0E0H5H4_ORYNI; Uncharacterized protein
TrEMBLB8ATM61e-161B8ATM6_ORYSI; Uncharacterized protein
STRINGORUFI04G25750.11e-161(Oryza rufipogon)
STRINGONIVA04G23170.11e-161(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.13e-25G2-like family protein