PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G25390.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 104aa    MW: 11185.5 Da    PI: 9.4407
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G25390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.35e-0730711454
                     HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     d+i + +++L+ llP+ + ++++ + s a +L++++ YI+sL
  ONIVA04G25390.1 30 DQIAELLSKLQALLPEsQARNGAHRGSAARVLQETCSYIRSL 71
                     68999***********666888888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.5531671IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-83075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-43071IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-83090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MSSSRRSRSR RAGSSVPSSS SSSRTSISED QIAELLSKLQ ALLPESQARN GAHRGSAARV  60
LQETCSYIRS LHQEVDNLSE TLAQLLASPD VTSDQAAVIR SLLM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination. {ECO:0000269|PubMed:20009022}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By epibrassinolide. {ECO:0000269|PubMed:20009022}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0965984e-89FP096598.1 Phyllostachys edulis cDNA clone: bphyst010g20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635178.18e-66transcription factor ILI1
SwissprotA2XY477e-67ILI1_ORYSI; Transcription factor ILI1
SwissprotQ7X7427e-67ILI1_ORYSJ; Transcription factor ILI1
TrEMBLA0A0D3G0S92e-64A0A0D3G0S9_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZRH32e-64A0A0D9ZRH3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H6E72e-64A0A0E0H6E7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PEQ72e-64A0A0E0PEQ7_ORYRU; Uncharacterized protein
STRINGOGLUM04G26950.13e-65(Oryza glumipatula)
STRINGORUFI04G28640.13e-65(Oryza rufipogon)
STRINGOS04T0641700-003e-65(Oryza sativa)
STRINGONIVA04G25390.13e-65(Oryza nivara)
STRINGOBART04G26980.13e-65(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122932837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-26bHLH family protein