PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G26660.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 415aa    MW: 44907.5 Da    PI: 7.8038
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G26660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.3e-40183261178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  ONIVA04G26660.1 183 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 261
                      6******************************98725689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33178246IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.291181259IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.8E-37182262IPR004333Transcription factor, SBP-box
PfamPF031108.6E-31184258IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MMNVPSAAAA SSCDDFGYNA TPPPPPSLLP IMDQDGGGGN IQRDHHHHHH QQLGYNLEPS  60
SLALLPPSNA AAAAAHHATI AHASPHDLLQ FYPTSHYLAA AGGAGGGGNP YSHFTAAAAA  120
GSTFQSYYQQ PPQAAPEYYF PTLVSSAEEN MASFAATQLG LNLGYRTYFP PRGGYTYGHH  180
PPRCQAEGCK ADLSSAKRYH RRHKVCEHHS KAPVVVTAGG LHQRFCQQCS RFHLLDEFDD  240
AKKSCRKRLA DHNRRRRKSK PSDGEHSGEK RRAQANKSAA TKDKAGSSSK NAGIGDGFET  300
QLLGGAHMSK DQDQAMDLGE VVKEAVDPKG KASMQQQQQQ AHHGIHQQSH QQHGFPFPSS  360
SGSCLFPQSQ GAVSSTDTSN IAQVQEPSLA FHQQHHQHSN ILQLGQAMFD LDFDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-271842581184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253271RRRRKSKPSDGEHSGEKRR
2254259RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7769920.0AB776992.1 Oryza rufipogon LG1 mRNA for squamosa promoter-binding-like protein 8, complete cds, strain: W630.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634037.10.0squamosa promoter-binding-like protein 8
SwissprotQ01KM70.0SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A0E0H6X90.0A0A0E0H6X9_ORYNI; Uncharacterized protein
TrEMBLL8B8J80.0L8B8J8_ORYRU; Squamosa promoter-binding-like protein 8
STRINGONIVA04G26660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-42squamosa promoter binding protein-like 8