PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G29800.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 483aa    MW: 52695.5 Da    PI: 8.5256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G29800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-06247269223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +CpdCg+ F r+++L+ H++  H
  ONIVA04G29800.1 247 SCPDCGEIFVRPDSLHLHQSIrH 269
                      8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.871246274IPR007087Zinc finger, C2H2
PROSITE patternPS000280246269IPR007087Zinc finger, C2H2
SuperFamilySSF563993.07E-19271482No hitNo description
Gene3DG3DSA:3.90.228.101.0E-12273482IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MVEPGRARET KVTASASSSA GSDAAVMKKK KKKKKLVVAS RKVDEKDKKQ VDYKCSRSSG  60
RDECCKVESR HQQCTEPESP SYRLALRSLF SCRNSSSSSH AGHHHHRAAD GKKLGCNSSS  120
ICKVKQDNPM QQHMRRAEDE LKVKDKPPVA EPYCKRRASV SACNISSERS VKKSVKQQQQ  180
EASSSLQSSA SISASSCSST AGGGGSFRGM QQLSLRRLSG CYECHMVVDP ISGVFRDNSS  240
MRATICSCPD CGEIFVRPDS LHLHQSIRHA VSELGAEDTS RNIISIIFQS SWLKKQSPVC  300
AIDRILKVHN AARTLARFDD YRAAVKAKAM AHRHPRCTAD GNELLRFHCA TLSCDLGLHG  360
ATHLCDHLSC AACAIIRHGF RPPAPGAGIR TMATSGRAHD AVVSSGSEGD RRAMLVCRVI  420
AGRVRREEAA AAAAEEEEEE EEEEEEEYDS VAGTTPGLYS NLDELDVFNP TAILPCFVVV  480
YRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12834KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0998560.0AK099856.1 Oryza sativa Japonica Group cDNA clone:J013110K19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634280.10.0uncharacterized protein LOC4337494
TrEMBLA0A0E0H8270.0A0A0E0H827_ORYNI; Uncharacterized protein
STRINGONIVA04G29800.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-87C2H2-like zinc finger protein