PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G01570.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 195aa    MW: 22087.8 Da    PI: 9.1071
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G01570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.2e-123381348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     +WT+eEd  l ++ + +G ++ +++a++m+    +R++kqc++rw+++l
  ONIVA05G01570.1 33 AWTPEEDACLERLARGYGFRHGRRVAEEMQpreRRRSPKQCRDRWRDHL 81
                     8*********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6042685IPR017930Myb domain
SMARTSM007171.1E-73083IPR001005SANT/Myb domain
PfamPF002491.4E-103381IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-1433105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-143389IPR009057Homeodomain-like
CDDcd001675.23E-93381No hitNo description
PROSITE profilePS500906.57482134IPR017877Myb-like domain
SMARTSM007179.786136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-690135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
METSSSDFSS TTEVAATPSS AMRIILRIRL SPAWTPEEDA CLERLARGYG FRHGRRVAEE  60
MQPRERRRSP KQCRDRWRDH LARDVYHRPF TADDDAELAH LRLRGGGGDR WKDISRAAHC  120
RTSRAMRRRW RELRKSDAFL RALYWHPDQP VPPLLDDAWS CSDVLDSSVA SYRGGCDAVA  180
GGGTIVAPGF ACFAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020920.0AP002092.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031E09.
GenBankAP0020930.0AP002093.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466B10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636830.14e-99transcription factor MYB3R-5
TrEMBLA0A0E0H8S71e-138A0A0E0H8S7_ORYNI; Uncharacterized protein
STRINGONIVA05G01570.11e-139(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-14myb domain protein r1