PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G01580.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 438aa    MW: 49872.7 Da    PI: 8.5836
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G01580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-0680102123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cg sF+ + +L++H+++H
  ONIVA05G01580.1  80 HDCKVCGASFKKPAHLRQHMQSH 102
                      56*******************99 PP
2zf-C2H219.52.7e-06166190123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+ s+srk++L+rH+ tH
  ONIVA05G01580.1 166 FSCHvdGCPFSYSRKDHLNRHLLTH 190
                      89*********************99 PP
3zf-C2H2110.0013195220123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      + Cp   C++ F+ k n +rH +  H
  ONIVA05G01580.1 195 FACPmeGCNRKFTIKGNIQRHVQEmH 220
                      78*******************98877 PP
4zf-C2H220.51.2e-06232256123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  +Cgk+F+  s L++H  +H
  ONIVA05G01580.1 232 FICPeeNCGKTFKYASKLQKHEESH 256
                      78*******************9988 PP
5zf-C2H216.72.1e-05323347223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      +C+  dC+ sFs ksnL +H +  H
  ONIVA05G01580.1 323 RCHlkDCKLSFSKKSNLDKHVKAvH 347
                      7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.78E-731102No hitNo description
SMARTSM00355153355IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.38580107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001680102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-9163192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.88E-6163192No hitNo description
PROSITE profilePS501579.349166195IPR007087Zinc finger, C2H2
SMARTSM003550.0016166190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168190IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-6193221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.18E-6193221No hitNo description
PROSITE profilePS5015710.866195225IPR007087Zinc finger, C2H2
SMARTSM003550.0019195220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197220IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-7228256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.57E-5229258No hitNo description
PROSITE profilePS5015711.24232256IPR007087Zinc finger, C2H2
SMARTSM003550.0018232256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234256IPR007087Zinc finger, C2H2
SMARTSM003557.8264289IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266289IPR007087Zinc finger, C2H2
SMARTSM0035513292313IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.19E-7303364No hitNo description
PROSITE profilePS5015711.967322352IPR007087Zinc finger, C2H2
SMARTSM003550.031322347IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-5323348IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280324347IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-6349375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.974353384IPR007087Zinc finger, C2H2
SMARTSM003553.5353379IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280355379IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGSVELGAEE REVAGGEGGS KGAAPPARDI RRYKCDFCSV VRSKKGLIRA HVLEHHKDEV  60
DDLDDYLGRG GGETCKEMDH DCKVCGASFK KPAHLRQHMQ SHSLEHWIPE NSKMREGLEW  120
TSTRMGRPFW EAPSRMPLSR SSSGWGDSPE KLHQECLVHT LFQRPFSCHV DGCPFSYSRK  180
DHLNRHLLTH QGKLFACPME GCNRKFTIKG NIQRHVQEMH KDGSPCESKK EFICPEENCG  240
KTFKYASKLQ KHEESHVKLD YSEVICCEPG CMKAFTNLEC LKAHNKSCHR HVVCDVCGTK  300
QLKKNFKRHQ RMHEGSCVTE RVRCHLKDCK LSFSKKSNLD KHVKAVHEQK RPFVCGFSGC  360
GKSFSYKHVR DNHEKSSAHV YVQANFEEID GERPRQAGGR KRKAIPVESL MRKRVAAPDD  420
DAPACDDGTE YLRWLLSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-1316328640157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-1316328640157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016310.0AK101631.1 Oryza sativa Japonica Group cDNA clone:J033054O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637660.10.0transcription factor IIIA isoform X1
TrEMBLA0A0E0H8S80.0A0A0E0H8S8_ORYNI; Uncharacterized protein
STRINGONIVA05G01580.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-90transcription factor IIIA