PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G01580.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 407aa    MW: 46026.4 Da    PI: 8.4664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G01580.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.31.5e-0680102123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cg sF+ + +L++H+++H
  ONIVA05G01580.2  80 HDCKVCGASFKKPAHLRQHMQSH 102
                      56*******************99 PP
2zf-C2H219.62.5e-06135159123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+ s+srk++L+rH+ tH
  ONIVA05G01580.2 135 FSCHvdGCPFSYSRKDHLNRHLLTH 159
                      89*********************99 PP
3zf-C2H211.10.0012164189123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      + Cp   C++ F+ k n +rH +  H
  ONIVA05G01580.2 164 FACPmeGCNRKFTIKGNIQRHVQEmH 189
                      78*******************98877 PP
4zf-C2H220.71.1e-06201225123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  +Cgk+F+  s L++H  +H
  ONIVA05G01580.2 201 FICPeeNCGKTFKYASKLQKHEESH 225
                      78*******************9988 PP
5zf-C2H216.81.9e-05292316223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      +C+  dC+ sFs ksnL +H +  H
  ONIVA05G01580.2 292 RCHlkDCKLSFSKKSNLDKHVKAvH 316
                      7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.04E-731102No hitNo description
SMARTSM00355153355IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.38580107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001680102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-9132161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-6132161No hitNo description
PROSITE profilePS501579.349135164IPR007087Zinc finger, C2H2
SMARTSM003550.0016135159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-6162190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.69E-6162190No hitNo description
PROSITE profilePS5015710.866164194IPR007087Zinc finger, C2H2
SMARTSM003550.0019164189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166189IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-7197225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.43E-5198227No hitNo description
PROSITE profilePS5015711.24201225IPR007087Zinc finger, C2H2
SMARTSM003550.0018201225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280203225IPR007087Zinc finger, C2H2
SMARTSM003557.8233258IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280235258IPR007087Zinc finger, C2H2
SMARTSM0035513261282IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.0E-7272333No hitNo description
PROSITE profilePS5015711.967291321IPR007087Zinc finger, C2H2
SMARTSM003550.031291316IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-5292317IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280293316IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-6318344IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.974322353IPR007087Zinc finger, C2H2
SMARTSM003553.5322348IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280324348IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGSVELGAEE REVAGGEGGS KGAAPPARDI RRYKCDFCSV VRSKKGLIRA HVLEHHKDEV  60
DDLDDYLGRG GGETCKEMDH DCKVCGASFK KPAHLRQHMQ SHSLEALNGL VSGWGDSPEK  120
LHQECLVHTL FQRPFSCHVD GCPFSYSRKD HLNRHLLTHQ GKLFACPMEG CNRKFTIKGN  180
IQRHVQEMHK DGSPCESKKE FICPEENCGK TFKYASKLQK HEESHVKLDY SEVICCEPGC  240
MKAFTNLECL KAHNKSCHRH VVCDVCGTKQ LKKNFKRHQR MHEGSCVTER VRCHLKDCKL  300
SFSKKSNLDK HVKAVHEQKR PFVCGFSGCG KSFSYKHVRD NHEKSSAHVY VQANFEEIDG  360
ERPRQAGGRK RKAIPVESLM RKRVAAPDDD APACDDGTEY LRWLLSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-1313225540157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-1313225540157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016310.0AK101631.1 Oryza sativa Japonica Group cDNA clone:J033054O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637660.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-109TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0E0H8S90.0A0A0E0H8S9_ORYNI; Uncharacterized protein
STRINGONIVA05G01580.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-109transcription factor IIIA