PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G01600.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 486aa    MW: 52634.9 Da    PI: 7.2189
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G01600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17170219155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  ONIVA05G01600.1 170 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 219
                      78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-16170228IPR016177DNA-binding domain
PfamPF008475.6E-9170219IPR001471AP2/ERF domain
CDDcd000184.19E-11171229No hitNo description
SMARTSM003802.4E-32171233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-17171228IPR001471AP2/ERF domain
PROSITE profilePS5103217.596171227IPR001471AP2/ERF domain
CDDcd000181.95E-12262307No hitNo description
SuperFamilySSF541712.16E-6262306IPR016177DNA-binding domain
SMARTSM003804.2E-13263311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MELDLNNVAE GVVEKHETAA RSDSGTSESS VLNGEASGAA TTPAEEGSSS TPPPPPPPPA  60
AVLEFSILRS SASASGENDA DDDEEEEATP SPPPHHQHQQ LLVTRELFPS AAPSPQHWAE  120
LGFLRPDPPR PHPDIRILAH APPPAPPPPP PQPQPQAAKK SRRGPRSRSS QYRGVTFYRR  180
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNLSD YEEDMRQMKS  240
LSKEEFVHVL RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKAYDK AAIKCNGREA  300
VTNFEPSTYD GELPTDAAAQ GADVDLNLSI SQPAASQQSP KRDSGSLGLQ IHHGSFEAPS  360
ELASRPHRFP LLTEHPPIWT AQPHPLFPNN EDASRSSDQK RKPSEGVAVP SWAWKQVSHH  420
HPAPPHTLPL PFFSSSSSSP SSSSAAASSG FSKAATTAAA AQHTATLRFD PTAPSSSSSS  480
RHHHHH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851170.0AY685117.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D23-like (AP2D23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639330.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AXC30.0AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A0E0H8T20.0A0A0E0H8T2_ORYNI; Uncharacterized protein
STRINGONIVA05G01600.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-83related to AP2.7