PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G01850.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 204aa    MW: 21081.1 Da    PI: 6.7542
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G01850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.34.8e-28381251100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+C++ Cvlapyfp ++p+kf  +h+            +lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ lka+l
  ONIVA05G01850.1  38 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHR------------ELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKAQL 119
                      7*******************************997............99********************************************* PP

           DUF260  95 allkee 100
                      a++++e
  ONIVA05G01850.1 120 ARAHAE 125
                      **9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.48237126IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-2738123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGSSSDTACT VATAPPSPTP TSPPPQLAAT TTTVVLSPCA ACKILRRRCV DRCVLAPYFP  60
PTEPHKFTTA HRELPEEQRA DAVSSMVYEA NARIRDPVYG CAGAICQLQK QVNDLKAQLA  120
RAHAELAGAR AQHAHLVALL CMEMAAAAPP QHPTTTAAAA AYCAAVGGAA SPAAPVDALY  180
VVDGAGAAAM QASPIGWVDE PLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-34281261111LOB family transfactor Ramosa2.1
5ly0_B3e-34281261111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0790210.0AC079021.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0008A07, complete sequence.
GenBankAC0930890.0AC093089.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1729_E02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638880.11e-119LOB domain-containing protein 1
SwissprotQ9SK084e-51LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A0E0H8W01e-143A0A0E0H8W0_ORYNI; Uncharacterized protein
TrEMBLQ5W7B91e-143Q5W7B9_ORYSJ; Putatvie LOB domain protein
STRINGONIVA05G01850.11e-144(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-39LOB domain-containing protein 1