PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G03610.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 451aa MW: 50451.1 Da PI: 8.1325

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G03610.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.7	3.7e-16	118	157	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+C+ks+ClkkYCeCf+a+ Cs++C+C+dCkN e ONIVA05G03610.1 118 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 157 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	26.36	37	158	IPR005172	CRC domain
SMART	SM01114	7.6E-18	118	159	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.3E-12	121	156	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MPPVRSAPVA PPPPPQQKKP AVPVSRPWPM SFTPHPPPPP PPPLPSNYYQ YVFSARVYCD 60 GCHCSPCGNK IENENIRKEA IETILLRNPL AFQPKIENSP NTVTVRKDNS EAIPPIPKHN 120 KGCHCRKSEC LKKYCECFQA NILCSKNCRC QDCKNFEGSE ERKALVQMKN ASDRNHIQEA 180 ANFALNGATT GSLGYKSSPV RRKKYQENSL GEQILSEAQF QPLASSCTGF GGDIAINYQS 240 KSSEMIYRSP LANTIPLIEV NDLVKNALVA CRKAPEAFLT KAGNKVEMQA EKQYQTNDEI 300 NNDKTKEQNL KEASLKDIQN KACIDRQNIN GTEPHLANSF KDSRPASPGT QALMCDEMDT 360 TFGNEDYRSP FVVPSRDQDI SELNADQERI VLTGLRDYLR VLITRGNINE PNGRCHSNQI 420 LVRDSNGIGF PEASWSNNCF FPRQIYVFQL S

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MPPVRSAPVA PPPPPQQKKP AVPVSRPWPM SFTPHPPPPP PPPLPSNYYQ YVFSARVYCD  60
GCHCSPCGNK IENENIRKEA IETILLRNPL AFQPKIENSP NTVTVRKDNS EAIPPIPKHN  120
KGCHCRKSEC LKKYCECFQA NILCSKNCRC QDCKNFEGSE ERKALVQMKN ASDRNHIQEA  180
ANFALNGATT GSLGYKSSPV RRKKYQENSL GEQILSEAQF QPLASSCTGF GGDIAINYQS  240
KSSEMIYRSP LANTIPLIEV NDLVKNALVA CRKAPEAFLT KAGNKVEMQA EKQYQTNDEI  300
NNDKTKEQNL KEASLKDIQN KACIDRQNIN GTEPHLANSF KDSRPASPGT QALMCDEMDT  360
TFGNEDYRSP FVVPSRDQDI SELNADQERI VLTGLRDYLR VLITRGNINE PNGRCHSNQI  420
LVRDSNGIGF PEASWSNNCF FPRQIYVFQL S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-19	71	168	47	133	Protein lin-54 homolog
5fd3_B	2e-19	71	168	47	133	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004771	0.0	AP004771.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0413A11.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623618.1	0.0	protein tesmin/TSO1-like CXC 5
TrEMBL	A0A0E0H9J7	0.0	A0A0E0H9J7_ORYNI; Uncharacterized protein
STRING	ONIVA05G03610.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5755	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	4e-65	Tesmin/TSO1-like CXC domain-containing protein