PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G03610.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 419aa    MW: 46710 Da    PI: 8.0581
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G03610.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.83.3e-16118157140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+C+ks+ClkkYCeCf+a+  Cs++C+C+dCkN e
  ONIVA05G03610.3 118 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 157
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163426.3637158IPR005172CRC domain
SMARTSM011147.6E-18118159IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-12121156IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MPPVRSAPVA PPPPPQQKKP AVPVSRPWPM SFTPHPPPPP PPPLPSNYYQ YVFSARVYCD  60
GCHCSPCGNK IENENIRKEA IETILLRNPL AFQPKIENSP NTVTVRKDNS EAIPPIPKHN  120
KGCHCRKSEC LKKYCECFQA NILCSKNCRC QDCKNFEGSE ERKALVQMKN ASDRNHIQEA  180
ANFALNGATT GSLGYKSSPV RRKKYQENSL GEQILSEAQF QPLASSCTGF GGDIAINYQS  240
KSSEMIYRSP LANTIPLIEV NDLVKNALVA CRKAPEAFLT KAGNKVEMQA EKQYQTNDEI  300
NNDKTKEQNL KEASLKDIQN KACIDRQNIN GTEPHLANSF KDSRPASPGT QALMCDEMDT  360
TFGNEDYRSP FVVPSRDQDI SELNADQERI VLTGLRDYLR VLITRGNING ECNLLTLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-197116847133Protein lin-54 homolog
5fd3_B1e-197116847133Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047710.0AP004771.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0413A11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623618.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A0E0H9J90.0A0A0E0H9J9_ORYNI; Uncharacterized protein
STRINGONIVA05G03610.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.18e-65Tesmin/TSO1-like CXC domain-containing protein