PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G04240.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 133aa    MW: 14161.5 Da    PI: 8.0439
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G04240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA27.64e-093251120
             GATA  1 CsnCgttkTplWRrgpdgnk 20
                     C+ Cg+t+Tp+WR gp g++
  ONIVA05G04240.1 32 CVECGATTTPMWRGGPTGPR 51
                     ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.2622649IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-52850No hitNo description
Gene3DG3DSA:3.30.50.104.0E-62949IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.9E-63251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MGSSDQKVIG IAAAAAAAAA AAAAEEAGRR CCVECGATTT PMWRGGPTGP RISEIVISRS  60
ESDCEGTMEG NCVPLKRIFY YHLLGLQKAA NVLLFLVPIR VLTMENNSCD ILHIIRIIGR  120
GCGIESKTRI IDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0875517e-79AC087551.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0431G05, complete sequence.
GenBankAP0149617e-79AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0H9T71e-91A0A0E0H9T7_ORYNI; Uncharacterized protein
STRINGONIVA05G04240.12e-92(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2612444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.14e-08GATA transcription factor 23