PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G04920.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 208aa MW: 21698.8 Da PI: 8.8075

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G04920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.1	2e-40	28	127	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+ael ONIVA05G04920.1 28 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAEL 121 7********************************************************************************************* PP DUF260 95 allkee 100 a++++ ONIVA05G04920.1 122 AAVRAD 127 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.227	27	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-40	28	125	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MMARRSCSMP AAGAGPGSAA AAVNTITPCA ACKLLRRRCA QECPFSPYFS PLEPHKFASV 60 HKVFGASNVS KMLLEVHESQ RGDAANSLVY EANLRLRDPV YGCMGAILTL QQQVQALEAE 120 LAAVRADIVR HKYRLPSAAA VLPSSHASHL LAAAAAARQL PVAGTMGVVT TATLPASASS 180 SSTTAVYAAA SSSTDYSSIT NENVPYFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-40	28	131	11	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-40	28	131	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134341	0.0	AC134341.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0027N19, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881485.1	1e-150	LOB domain-containing protein 15 isoform X1
Swissprot	Q9AT61	6e-67	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	C7J2W5	1e-148	C7J2W5_ORYSJ; Os05g0165450 protein
STRING	ORUFI05G04770.1	1e-149	(Oryza rufipogon)
STRING	OS05T0165450-00	1e-148	(Oryza sativa)
STRING	ONIVA05G04920.1	1e-149	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-58	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]