PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G07370.6

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 175aa MW: 19441.8 Da PI: 5.1299

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G07370.6	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.5	1.3e-31	51	101	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyeys+ ONIVA05G07370.6 51 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSN 101 79***********************************************95 PP
2	K-box	17.1	2.3e-07	129	159	68	98
K-box 68 kKnellleqieelqkkekelqeenkaLrkkl 98 +ne+++++ie++q++e elq++n++ ++++ ONIVA05G07370.6 129 AQNEYMCAEIEYMQRRETELQNDNMYSKSEM 159 589*********************9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.422	43	103	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-39	43	102	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-33	45	116	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.72E-46	45	117	No hit	No description
PROSITE pattern	PS00350	0	45	99	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-33	45	65	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.7E-27	52	99	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-33	65	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-33	80	101	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MHIYKEQEAE PSTGLMMPEP APVASPGSGG SGGSGSVGAE KIGSRGKIEI KRIENTTNRQ 60 VTFCKRRNGL LKKAYELSVL CDAEVALVVF SSRGRLYEYS NNSVEETIER YKKANSDTSN 120 ASTVAEINAQ NEYMCAEIEY MQRRETELQN DNMYSKSEMK DKYGSVSCMC FLQGE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	1e-20	45	115	2	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	1e-20	45	115	2	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	1e-20	45	115	2	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	1e-20	45	115	2	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	2e-20	45	130	2	90	Myocyte-specific enhancer factor 2A
3kov_B	2e-20	45	130	2	90	Myocyte-specific enhancer factor 2A
3kov_I	2e-20	45	130	2	90	Myocyte-specific enhancer factor 2A
3kov_J	2e-20	45	130	2	90	Myocyte-specific enhancer factor 2A
3p57_A	2e-20	45	130	2	90	Myocyte-specific enhancer factor 2A
3p57_B	2e-20	45	130	2	90	Myocyte-specific enhancer factor 2A
3p57_C	2e-20	45	130	2	90	Myocyte-specific enhancer factor 2A
3p57_D	2e-20	45	130	2	90	Myocyte-specific enhancer factor 2A
3p57_I	2e-20	45	130	2	90	Myocyte-specific enhancer factor 2A
3p57_J	2e-20	45	130	2	90	Myocyte-specific enhancer factor 2A
5f28_A	2e-20	45	130	3	91	MEF2C
5f28_B	2e-20	45	130	3	91	MEF2C
5f28_C	2e-20	45	130	3	91	MEF2C
5f28_D	2e-20	45	130	3	91	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269\|PubMed:16326928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB232157	0.0	AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds.
GenBank	AK111723	0.0	AK111723.1 Oryza sativa Japonica Group cDNA clone:J023027E19, full insert sequence.
GenBank	FJ750942	0.0	FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881631.1	1e-75	MADS-box transcription factor 58 isoform X2
Swissprot	Q2V0P1	3e-77	MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBL	A0A0E0HAX1	1e-126	A0A0E0HAX1_ORYNI; Uncharacterized protein
STRING	OBART05G06600.1	3e-77	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42830.1	2e-52	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Li H, et al. Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell, 2011. 23(7): p. 2536-52 [PMID:21784949] Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58. Plant Sci., 2012. 183: p. 183-9 [PMID:22195592] Yun D, et al. OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice. Mol Plant, 2013. 6(3): p. 743-56 [PMID:23300256] Yan D, et al. Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development. Plant J., 2015. 82(1): p. 12-24 [PMID:25647350] Zheng M, et al. DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa). New Phytol., 2015. 206(4): p. 1476-90 [PMID:25675970] Chen R, et al. A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58. Mol Plant, 2015. 8(7): p. 1069-89 [PMID:25684654] Hu Y, et al. Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development. Mol Plant, 2015. 8(9): p. 1366-84 [PMID:25917758]