PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G11160.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24103.5 Da    PI: 8.8109
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G11160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.5e-171660145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     krie k  r v fskRr++++ KA ELS LC+a++a +++s+ g+
  ONIVA05G11160.1 16 KRIEKKDARDVCFSKRRQTLFNKAGELSLLCNANIAAVVISPAGR 60
                     79****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.245868IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-23867IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-21878IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-151030IPR002100Transcription factor, MADS-box
PfamPF003196.7E-191764IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-153045IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-154566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVKGKGRAGR KKVEIKRIEK KDARDVCFSK RRQTLFNKAG ELSLLCNANI AAVVISPAGR  60
GFSFALPSVD DVADRLASMA MGIPNNHSLG GGYHDSGEVT NIAQQQKIEY VELQKSLEKS  120
EKKKRVQEAM EKERAGHLMQ SLTSEVNLLG QDELEEMHNK LSALPYTSIA KFYQVLQDAK  180
GTRMPLPQPH IEIACQSQFL FEEQAVTPAN ADFPGSNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638580.11e-160agamous-like MADS-box protein AGL61
TrEMBLA0A0E0HC911e-161A0A0E0HC91_ORYNI; Uncharacterized protein
STRINGONIVA05G11160.11e-162(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157431316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-15AGAMOUS-like 29