PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G11880.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 220aa MW: 25035.9 Da PI: 5.6681

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G11880.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.9	1.3e-21	86	173	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 ++Y++YA++ GF +++s+ ++s+ +++ +++f C e +++e+ + +++rr++ + +tgCka+++v k+ d+kw+vt ++l+HnH+ ONIVA05G11880.1 86 NYYDDYARKWGFITKISSCRRSQITKQYNRYEFACHSERSSRESGASaGSRSRRSSRVLKTGCKARMVVVKR-DEKWVVTIVDLDHNHP 173 69**********************************999998877567888899999*******99.9************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-20	86	173	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MEDNDDRASA EITTDQENHL KDALIQVFAA TSEHQEGEGE GAEVVQDEEI GEGVEGVRDE 60 EIGDINSKPD KPYVGMEFRD KDEAKNYYDD YARKWGFITK ISSCRRSQIT KQYNRYEFAC 120 HSERSSRESG ASAGSRSRRS SRVLKTGCKA RMVVVKRDEK WVVTIVDLDH NHPPLNPSAL 180 MSLKPHRLIK DEDHDLLEFL RTNKIPTQRI IKCPAGVNVL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639432.1	1e-149	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0E0HCJ0	1e-163	A0A0E0HCJ0_ORYNI; Uncharacterized protein
STRING	ONIVA05G11880.1	1e-164	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-13	FAR1 family protein