PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G12010.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 127aa    MW: 14393.8 Da    PI: 9.5345
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G12010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.32.3e-17352857
                     -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     t++qle+L++ + ++ yp+++ r+eL+ klgLt++q ++WF+ rR k++k
  ONIVA05G12010.1  3 TPYQLEVLKRTYTEDLYPNETIRAELSVKLGLTDKQLQMWFCHRRLKDRK 52
                     89**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.382153IPR001356Homeobox domain
SMARTSM003894.1E-8157IPR001356Homeobox domain
SuperFamilySSF466892.74E-14252IPR009057Homeodomain-like
CDDcd000861.35E-12253No hitNo description
Gene3DG3DSA:1.10.10.602.2E-15352IPR009057Homeodomain-like
PfamPF000464.4E-15352IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MKTPYQLEVL KRTYTEDLYP NETIRAELSV KLGLTDKQLQ MWFCHRRLKD RKPPPKRQQL  60
EEDVHVPVMA PPPVLPPPLP HSKLTMAPGG MYGEQLLPSS SRRGTGRPSA ILDMSDLQCL  120
PLLTSHG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639400.13e-47homeobox-DDT domain protein RLT2 isoform X1
RefseqXP_015639401.13e-47homeobox-DDT domain protein RLT2 isoform X2
SwissprotQ9FFH11e-20RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A0E0HCK47e-87A0A0E0HCK4_ORYNI; Uncharacterized protein
STRINGONIVA05G12010.11e-87(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2352544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.12e-17homeobox-1