PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G13170.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 224aa    MW: 23588.1 Da    PI: 4.4823
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G13170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM331.7e-101282278
              NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78
                      pG + +P+d+elv  yL ++++g++l+l     e+d +++ P++L +  +++ +e +f ++++ k+a+gkr++ ++
  ONIVA05G13170.1 12 LPGPKLDPSDDELVGGYLLRRLQGQPLPL-----EADPLSARPRNLAAD-HGRGDEAFFLAEAQAKNAKGKRQRSTV 82
                     7999**********************999.....79**********844.456679999999999999999887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-11483IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAAAAAGADG LLPGPKLDPS DDELVGGYLL RRLQGQPLPL EADPLSARPR NLAADHGRGD  60
EAFFLAEAQA KNAKGKRQRS TVEGQSIAGC VDYGGAGFAI ALLRGKAKGS AEGPAVEASQ  120
RDLRLQRQRA GCRPDSTWCG KEVCAQQDED WISTRADTCS FMLVLPSMVP LFLHRDEAGD  180
EQGDAPVEVT HGDEQGEGGN PNSSGSIVLE HEGATDQDEA RAIV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378KGKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-148CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0HD141e-160A0A0E0HD14_ORYNI; Uncharacterized protein
STRINGONIVA05G13170.11e-161(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137