PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G15390.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 445aa    MW: 48769.8 Da    PI: 8.5589
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G15390.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.1e-13128184155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  ONIVA05G15390.2 128 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 184
                      57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-14128194IPR016177DNA-binding domain
PfamPF008471.5E-8128184IPR001471AP2/ERF domain
SMARTSM003802.2E-18129198IPR001471AP2/ERF domain
PROSITE profilePS5103218.228129192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-12129193IPR001471AP2/ERF domain
PRINTSPR003674.8E-5130141IPR001471AP2/ERF domain
PRINTSPR003674.8E-5174194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MRSPPFEIPP LSSPRPPPPN GHPRFGSLFS SRLASPPTPI EASPGPAAGM QQKLEAAAAA  60
AGGGDGAEWS RGMQKMEAVG AGGEGVGAGA EQVAPPPRRP VAARKERVCT AKERISRMPP  120
CAAGKRSSIY RGVTRHRWTG RYEAHLWDKS TWNQNQNKKG KQGAYDDEEA AARAYDLAAL  180
KYWGAGTQIN FPVSDYARDL EEMQMISKED YLVSLRRQLH NSRWDASLGH LLGNDYMSLG  240
KDITLDGKFA GTFGLERKID LTNYIRWWLP KKTRQSDTSK MEEVTDEIRA IESSMQRTEP  300
YKFPSLGLHS NSKPSSVVLS ACDILSQSDA FKSFSEKSTK LSEECTFSKE MDEGKTVTPV  360
PATGHDTTAV NMNVNGLLVQ RAPYTLPSVT AQMKNTWNPA DPSADPLFWT NFILPASQPV  420
TMATIATTTF AKNEVSSSDP FHGQE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8978770.0AB897877.1 Oryza sativa Japonica Group SMOS1 mRNA for AP2 type transcription factor, complete cds.
GenBankAK0593240.0AK059324.1 Oryza sativa Japonica Group cDNA clone:001-025-H11, full insert sequence.
GenBankEU3348570.0EU334857.1 Oryza sativa Indica Group AP2/EREBP-like protein (AP2LP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638088.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK23e-91AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0E0HDU00.0A0A0E0HDU0_ORYNI; Uncharacterized protein
STRINGONIVA05G15390.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.13e-87AP2 family protein