PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G17560.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 270aa    MW: 28027.2 Da    PI: 7.5074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G17560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-1591136251
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                      +y+GVr+++ +g+Wv+eIr+p +   r r +lg++ tae Aa a++aa  
  ONIVA05G17560.1  91 RYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATAEAAAVAHDAAVC 136
                      59****777.**********943...5*******************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-891134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-2391146IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1591139IPR016177DNA-binding domain
SMARTSM003801.1E-2391163IPR001471AP2/ERF domain
PROSITE profilePS5103219.79691157IPR001471AP2/ERF domain
PRINTSPR003676.0E-992103IPR001471AP2/ERF domain
PRINTSPR003676.0E-9114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MPRSGILYAR VEKVSADLAE PINGGRGGDT THTRRLVLTP PRTNELELRV ISEIVVAVSA  60
NDEQASPEGE DGTYMGRVAA SGGGGGGEMM RYRGVRRRRW GKWVSEIRVP GTRERLWLGS  120
YATAEAAAVA HDAAVCLLRL GGGRRAAAGG GGGLNFPARA LAAAAAASSY GGAGGLLSPR  180
SVQRVASDAG MVADAQLVDL RRDHPPAAAA ASSSGSGVAG DGARKQGTRG EVSDTYWCRN  240
GEDGSRSWSS GSEELIVYEG LSVDDMEILM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1248360.0AC124836.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092E21, complete sequence.
GenBankAC1376230.0AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638993.11e-56ethylene-responsive transcription factor ERF014
TrEMBLA0A0E0HEL80.0A0A0E0HEL8_ORYNI; Uncharacterized protein
STRINGONIVA05G17560.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.13e-09ERF family protein