PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G18720.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 365aa    MW: 37131.2 Da    PI: 4.9708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G18720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.3e-20164213255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  ONIVA05G18720.1 164 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 213
                      7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.7E-33164222IPR001471AP2/ERF domain
PfamPF008471.2E-13164213IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-22164222IPR016177DNA-binding domain
PROSITE profilePS5103225.686164221IPR001471AP2/ERF domain
SMARTSM003801.8E-37164227IPR001471AP2/ERF domain
PRINTSPR003671.2E-11165176IPR001471AP2/ERF domain
CDDcd000182.83E-14172223No hitNo description
PRINTSPR003671.2E-11187203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MADQRRRFRG GGDWQASVDD VVDDGGELEA AAAAAAARGS VLSGEYQAQE MSTMVSALTW  60
VVAAGHDDHG GGQWSGLVDV PATTLAGGGG GDYGHGAQGS YYYYGAAPTS TPEFVAGGQQ  120
EQLSSDVPQG GASLGLAMDE HSPTYTVEAS SSADQHGGGG GGRRYRGVRQ RPWGKWAAEI  180
RDPHKAARVW LGTFETAEAA ARAYDEAALR FRGSRAKLNF PEDARLSSPP AGAGAGGATA  240
AAQPVPVAYP ASAVSDYLQY QMLLHGGGGG GGGRYPLYYG GGAAAAMSSS LGPYSSIPTS  300
SVTVASVPSS SSAASSSSGY GAPAEHGEAV QWTSWPDGGG WTYPATTSSW SGSSQYPPPP  360
RPPQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-24162221363ATERF1
3gcc_A9e-24162221363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1053180.0AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638449.21e-173ethylene-responsive transcription factor ABR1
TrEMBLA0A0E0HF090.0A0A0E0HF09_ORYNI; Uncharacterized protein
STRINGONIVA05G18720.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1742999
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-16ethylene response factor 110