PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G18780.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 267aa MW: 27603.9 Da PI: 9.5703

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G18780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.8	5.5e-14	186	237	3	54
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 + +r++r++kNRe+A rsR+RK+a+i+eLe v+eLe+e +L e ee ++ ONIVA05G18780.1 186 AMQRQKRMIKNRESAARSRERKQAYIAELEAQVAELEEEHAQLLREQEEKNQ 237 689**************************************99977666544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.9E-9	184	249	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.875	186	234	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.4E-12	186	237	IPR004827	Basic-leucine zipper domain
CDD	cd14707	5.92E-17	188	234	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-13	189	235	No hit	No description
SuperFamily	SSF57959	6.25E-11	189	235	No hit	No description
PROSITE pattern	PS00036	0	191	206	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MASSRVMAAA AASSSSSPPP PPPAAAAAGG AADLARFRST SSGIGSMNMD DILRNIYGEA 60 APPPGAAGSA PAPPPAGEAA GAPVAEVAAR RTAEEVWKEI SSSGGLSAPG PAPAAGAAGR 120 SGGPEMTLED FLAREDDPRA TAVEGNMVVG FPNGTEGVGT AGGGRGGGGG GRGRKRTLMD 180 PADRAAMQRQ KRMIKNRESA ARSRERKQAY IAELEAQVAE LEEEHAQLLR EQEEKNQKRL 240 KEIKEQAVAV VIRKKTQDLR RTNSMEW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	170	GGRGGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00648	PBM	Transfer from LOC_Os05g36160	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT834109	0.0	CT834109.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA060C07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639395.1	0.0	bZIP transcription factor 12-like
Swissprot	Q0JHF1	2e-64	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A0E0HF19	0.0	A0A0E0HF19_ORYNI; Uncharacterized protein
STRING	OS05T0437700-01	1e-164	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	2e-13	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]